Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB0764_RS24160 Genome accession   NZ_CP162497
Coordinates   4600339..4600770 (-) Length   143 a.a.
NCBI ID   WP_406866596.1    Uniprot ID   -
Organism   Priestia megaterium strain 10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4595339..4605770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0764_RS24125 (AB0764_24120) csrA 4595795..4596025 (-) 231 WP_013085431.1 carbon storage regulator CsrA -
  AB0764_RS24130 (AB0764_24125) fliW 4596050..4596472 (-) 423 WP_014457794.1 flagellar assembly protein FliW -
  AB0764_RS24135 (AB0764_24130) flgL 4596553..4597434 (-) 882 WP_014457793.1 flagellar hook-associated protein FlgL -
  AB0764_RS24140 (AB0764_24135) flgK 4597437..4598948 (-) 1512 WP_406866593.1 flagellar hook-associated protein FlgK -
  AB0764_RS24145 (AB0764_24140) - 4598967..4599428 (-) 462 WP_223260217.1 flagellar protein FlgN -
  AB0764_RS24150 (AB0764_24145) flgM 4599450..4599704 (-) 255 WP_406866594.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0764_RS24155 (AB0764_24150) - 4599864..4600277 (-) 414 WP_406866595.1 TIGR03826 family flagellar region protein -
  AB0764_RS24160 (AB0764_24155) comFC 4600339..4600770 (-) 432 WP_406866596.1 ComF family protein Machinery gene
  AB0764_RS24165 (AB0764_24160) - 4601031..4602536 (-) 1506 WP_087944206.1 DEAD/DEAH box helicase -
  AB0764_RS24170 (AB0764_24165) - 4602616..4603461 (-) 846 WP_014457786.1 DegV family protein -
  AB0764_RS24175 (AB0764_24170) - 4603567..4604004 (-) 438 WP_208732833.1 YaaR family protein -
  AB0764_RS24180 (AB0764_24175) fliS 4604125..4604556 (-) 432 WP_014457784.1 flagellar export chaperone FliS -
  AB0764_RS24185 (AB0764_24180) - 4604940..4605623 (-) 684 WP_013059772.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16570.09 Da        Isoelectric Point: 9.0890

>NTDB_id=1026594 AB0764_RS24160 WP_406866596.1 4600339..4600770(-) (comFC) [Priestia megaterium strain 10]
MQSIIERFKFQGDYEIIQAFKEQWYKFYKKECNPKAILVPIPLTDERLYERGFNQSLALAELLSDNIEIPLIRCSGTKQS
KKNRRSRLTERLEFKVVDSSMVTNQEFLLIDDIYTTGATVRQAANCLQEAGARSVRSLTLIRA

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1026594 AB0764_RS24160 WP_406866596.1 4600339..4600770(-) (comFC) [Priestia megaterium strain 10]
ATGCAAAGCATAATAGAACGTTTTAAATTTCAAGGAGATTATGAAATTATCCAAGCATTCAAGGAGCAGTGGTATAAGTT
CTATAAAAAAGAATGTAATCCAAAAGCTATACTAGTTCCTATACCTTTAACGGACGAAAGATTATATGAGAGAGGGTTTA
ACCAATCCTTAGCGCTAGCTGAGCTTCTCAGTGATAATATAGAAATACCTCTTATTCGCTGTTCAGGAACAAAGCAATCA
AAGAAGAATAGGCGAAGTCGGCTGACAGAAAGGCTGGAATTTAAAGTAGTCGATTCCTCAATGGTTACGAATCAAGAATT
TCTCTTAATTGATGACATTTATACAACGGGAGCAACCGTGCGCCAAGCGGCAAATTGTTTGCAGGAAGCTGGGGCACGTT
CGGTTCGTTCGCTCACTTTAATTCGTGCATGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(56-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

48.276

100

0.49
  comFC Lactococcus lactis subsp. cremoris KW2

36.364

100

0.364
  comFC/cflB Streptococcus mitis SK321

36.62

99.301

0.364
  comFC/cflB Streptococcus pneumoniae TIGR4

35.862

100

0.364
  comFC/cflB Streptococcus pneumoniae Rx1

35.862

100

0.364
  comFC/cflB Streptococcus pneumoniae D39

35.862

100

0.364
  comFC/cflB Streptococcus pneumoniae R6

35.862

100

0.364

Multiple sequence alignment