Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB3X08_RS02310 Genome accession   NZ_CP162490
Coordinates   501119..502678 (-) Length   519 a.a.
NCBI ID   WP_369935974.1    Uniprot ID   -
Organism   Xanthomonas tesorieronis strain DAR 34887     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 496119..507678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X08_RS02285 (AB3X08_02285) - 496914..497639 (+) 726 WP_369935968.1 ComF family protein -
  AB3X08_RS02290 (AB3X08_02290) - 497739..498194 (+) 456 WP_369935969.1 SecDF P1 head subdomain-containing protein -
  AB3X08_RS02295 (AB3X08_02295) ubiA 498263..499165 (-) 903 WP_369935970.1 4-hydroxybenzoate octaprenyltransferase -
  AB3X08_RS02305 (AB3X08_02305) - 500013..500843 (+) 831 WP_369935972.1 alpha/beta fold hydrolase -
  AB3X08_RS02310 (AB3X08_02310) comM 501119..502678 (-) 1560 WP_369935974.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB3X08_RS02315 (AB3X08_02315) ubiK 502692..502961 (-) 270 WP_009595755.1 ubiquinone biosynthesis accessory factor UbiK -
  AB3X08_RS02320 (AB3X08_02320) - 503138..503476 (+) 339 WP_003480503.1 P-II family nitrogen regulator -
  AB3X08_RS02325 (AB3X08_02325) - 504143..506122 (+) 1980 WP_369938387.1 beta-N-acetylhexosaminidase family protein -
  AB3X08_RS02330 (AB3X08_02330) - 506292..507023 (-) 732 WP_369935975.1 hypothetical protein -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 54873.66 Da        Isoelectric Point: 8.9618

>NTDB_id=1026463 AB3X08_RS02310 WP_369935974.1 501119..502678(-) (comM) [Xanthomonas tesorieronis strain DAR 34887]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQAFTARTL
LEVCALLNGAKTLPAAEALPAAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSATVRARVEQARQRQLARGGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAGSDT
IATAHLTEAIGYRQLDRGEPASPQADSVVRAGAARRAAR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=1026463 AB3X08_RS02310 WP_369935974.1 501119..502678(-) (comM) [Xanthomonas tesorieronis strain DAR 34887]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTGTCCGG
CGGACTGCCGGCCACGCAGATCGTCGGCCTGCCCGAGGCCGCGGTGCGCGAATCGCGCGATCGCGTGCGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAAGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGGCAACTCGACCCGCAGGCGCTGGGCAATTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAGCTGCGCGCCGTGGACGGGGTGCTGCCGGCGGCGCTGGCCGCCGCCCAGGCCGGGC
GCACGCTGATCGTGCCGGCCGGCAACGGCCCCGAAGCGGCGCTGGCGCAGCACGTGCAGGCGTTCACCGCGCGCACCCTG
CTCGAAGTCTGCGCGCTGTTGAACGGCGCCAAGACCCTGCCCGCCGCCGAAGCGCTGCCGGCCGCGGCCACGCCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAAGCCCAGGCGCGGCGTGCGCTGGAGATCGCGGCGGCCGGTCATCACCATCTGCTGT
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGATCCGGCGCGCTGGCGGCAACGGCCGTACCGATC
TCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACCCATCCGCGCCCCGGCGAGATCTCTCTGGCGCATC
GCGGTGTGTTGTTCCTGGACGAATTGCCCGAGTGGAACCGGCACGCACTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACGGTGTCGCGGGCCGCGCGCAGCGCAGAGTTCCCGGCCCGGTTCCAACTGGTCGCCGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGACGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTACCGCGCGCGCATCTCCG
GTCCGTTGCTGGACCGCATCGACCTGCACGTGGACGTGCCGCGGCTGCCGCCGCAGGCGCTGCGCGCCGACGCCGCTCCC
GGCGAAAGCAGCGCCACCGTGCGTGCGCGAGTGGAACAGGCGCGGCAACGCCAGCTGGCGCGCGGCGGCTGCCCCAACGG
CCAGCTCGGTCACAGCGAGACCCTGCGTGACTGCCGCCTGCAACCGCGCGACGAAGCGCTGCTGGAGCACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCCTTGCACCGCATCCTGCGCGTGGCGCGCACCATCGCCGATCTGGCTGGCAGCGACACG
ATCGCCACCGCGCATCTGACCGAAGCGATCGGCTATCGGCAACTGGATCGCGGCGAGCCCGCATCGCCGCAAGCGGACTC
CGTTGTGCGCGCCGGCGCAGCGCGGCGCGCGGCGCGGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.313

96.146

0.541
  comM Vibrio campbellii strain DS40M4

54.98

96.724

0.532
  comM Haemophilus influenzae Rd KW20

54.167

97.11

0.526
  comM Glaesserella parasuis strain SC1401

53.571

97.11

0.52
  comM Legionella pneumophila str. Paris

50.397

97.11

0.489
  comM Legionella pneumophila strain ERS1305867

50.397

97.11

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

97.688

0.435

Multiple sequence alignment