Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB3X10_RS02415 Genome accession   NZ_CP162487
Coordinates   534299..535846 (-) Length   515 a.a.
NCBI ID   WP_369978765.1    Uniprot ID   -
Organism   Xanthomonas bundabergensis strain DAR 80977     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 529299..540846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X10_RS02395 (AB3X10_02390) ubiA 529712..530614 (-) 903 WP_369978759.1 4-hydroxybenzoate octaprenyltransferase -
  AB3X10_RS02405 (AB3X10_02400) - 531228..532055 (+) 828 WP_369978761.1 alpha/beta fold hydrolase -
  AB3X10_RS02410 (AB3X10_02405) - 533200..534096 (+) 897 WP_369978763.1 WYL domain-containing protein -
  AB3X10_RS02415 (AB3X10_02410) comM 534299..535846 (-) 1548 WP_369978765.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB3X10_RS02420 (AB3X10_02415) ubiK 535860..536132 (-) 273 WP_369978767.1 ubiquinone biosynthesis accessory factor UbiK -
  AB3X10_RS02425 (AB3X10_02420) - 536309..536647 (+) 339 WP_003480503.1 P-II family nitrogen regulator -
  AB3X10_RS02430 (AB3X10_02425) - 536728..537462 (-) 735 WP_369978769.1 hypothetical protein -
  AB3X10_RS02435 (AB3X10_02430) speE 537632..538483 (-) 852 WP_369978771.1 polyamine aminopropyltransferase -
  AB3X10_RS02440 (AB3X10_02435) speA 538790..540679 (+) 1890 WP_369978772.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 54413.26 Da        Isoelectric Point: 8.1045

>NTDB_id=1026408 AB3X10_RS02415 WP_369978765.1 534299..535846(-) (comM) [Xanthomonas bundabergensis strain DAR 80977]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAMLCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQALSHYEFLGELALTGELRPVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQAFTARTL
LEVCALLNGTKTLPAAAALPAAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRAPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDGIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRARVEQARQRQLARAGCPNGQLGHGETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLDGSDA
IATAHLTEAIGYRQLDRGEPAAPGLEPLAHAIDAL

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=1026408 AB3X10_RS02415 WP_369978765.1 534299..535846(-) (comM) [Xanthomonas bundabergensis strain DAR 80977]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTGTCCGG
CGGGCTGCCGGCGACGCAGATCGTCGGCCTGCCCGAAGCCGCGGTACGCGAATCGCGCGACCGGGTGCGTGCCGCCATGC
TGTGCGCGCAATACGAATTCCCGGCACGGCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAAGGCGGGCGC
TTCGACCTGCCGATCGCATTGGGCATCCTCGCCGCCGCCGGGCAGCTCGACCCGCAGGCGCTGAGCCACTACGAATTCCT
CGGCGAACTGGCCCTGACCGGCGAACTGCGCCCCGTGGACGGCGTGCTGCCGGCGGCGCTGGCCGCCGCGCAGGCCGGAC
GCACCCTGATCGTGCCCGCCGGCAACGGCCCCGAGGCGGCGCTGGCGCAGCACGTGCAGGCATTCACCGCACGCACCCTG
CTCGAGGTCTGCGCGCTGTTGAACGGCACCAAGACCTTGCCGGCCGCCGCCGCCCTGCCGGCCGCGGCCACGCCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAGGCGCAGGCGCGGCGCGCGCTGGAGATCGCCGCCGCCGGCCACCACCACCTGCTGC
TGATCGGCAGTCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCGGGGATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGACCCGGCACGCTGGCGGCAGCGCCCCTACCGCGC
GCCGCATCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACCCATCCACGCCCGGGCGAGATCTCGCTGGCGCATC
GCGGCGTGCTGTTCCTGGACGAACTGCCCGAATGGAACCGGCACGCGCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACGGTGTCGCGGGCCGCGCGCAGCGCCGAGTTCCCGGCCCGCTTCCAACTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGCTGCCGCTGCAGCGACGATGGCATCCGCCGCTACCGCGCGCGCATCTCCG
GCCCCTTGCTGGATCGCATCGACCTGCATGTGGACGTGCCGCGGCTGCCACCGCAGGCGCTGCGCGCCGATGCCGCGCCC
GGCGAAAGCAGCGCCGCGGTGCGCGCCCGCGTGGAGCAGGCACGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACGGCGAAACCTTGCGCGACTGCCGCCTGCAGCCGCGCGACGAGGCTCTGCTGGAACACGCCATCGACC
GCCTGCGGCTGTCGGCACGCTCGCTGCACCGCATCCTGCGCGTGGCGCGCACCATCGCCGACCTGGACGGCAGCGACGCG
ATCGCCACCGCGCACCTGACCGAGGCGATCGGCTACCGGCAACTGGACCGCGGCGAACCCGCAGCACCGGGGCTAGAGCC
GCTAGCGCATGCAATAGACGCGCTCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.313

96.893

0.546
  comM Vibrio campbellii strain DS40M4

54.781

97.476

0.534
  comM Haemophilus influenzae Rd KW20

54.365

97.864

0.532
  comM Glaesserella parasuis strain SC1401

53.175

97.864

0.52
  comM Legionella pneumophila str. Paris

50.803

96.699

0.491
  comM Legionella pneumophila strain ERS1305867

50.803

96.699

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

98.447

0.439

Multiple sequence alignment