Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQL18_RS04315 Genome accession   NZ_LS483486
Coordinates   814334..814840 (-) Length   168 a.a.
NCBI ID   WP_005668849.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12194     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 809334..819840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL18_RS04280 (NCTC12194_00863) hpf 809567..809890 (-) 324 WP_005653397.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DQL18_RS04285 (NCTC12194_00864) bamC 810062..810709 (-) 648 WP_005668207.1 outer membrane protein assembly factor BamC -
  DQL18_RS04290 (NCTC12194_00865) dapA 810820..811716 (-) 897 WP_005653399.1 4-hydroxy-tetrahydrodipicolinate synthase -
  DQL18_RS04295 (NCTC12194_00866) bcp 811817..812284 (+) 468 WP_005668209.1 thioredoxin-dependent thiol peroxidase -
  DQL18_RS04300 (NCTC12194_00867) exbB 812453..812905 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  DQL18_RS04305 (NCTC12194_00868) exbD 812909..813352 (+) 444 WP_005648853.1 TonB system transport protein ExbD -
  DQL18_RS04310 (NCTC12194_00869) - 813362..814156 (+) 795 WP_005653402.1 energy transducer TonB -
  DQL18_RS04315 (NCTC12194_00870) ssb 814334..814840 (-) 507 WP_005668849.1 single-stranded DNA-binding protein Machinery gene
  DQL18_RS04320 (NCTC12194_00871) uvrA 814993..817824 (+) 2832 WP_050838133.1 excinuclease ABC subunit UvrA Machinery gene

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18839.64 Da        Isoelectric Point: 5.2733

>NTDB_id=1025944 DQL18_RS04315 WP_005668849.1 814334..814840(-) (ssb) [Haemophilus influenzae strain NCTC12194]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGNEMGSSPQPSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1025944 DQL18_RS04315 WP_005668849.1 814334..814840(-) (ssb) [Haemophilus influenzae strain NCTC12194]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGTTCTCAAGTGTATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTATGGTAATGAGATGGGATCTTCACCACAACCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.956

100

0.732
  ssb Vibrio cholerae strain A1552

56.983

100

0.607
  ssb Neisseria meningitidis MC58

49.711

100

0.512
  ssb Neisseria gonorrhoeae MS11

49.711

100

0.512