Detailed information NTG1025850

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: DQL22_RS00865
• Genome accession: NZ_LS483485
• Coordinates: 173930..174589 (-)
• Length: 219 a.a.
• NCBI ID: WP_111300533.1
• Uniprot ID: -
• Organism: Aggregatibacter aphrophilus strain NCTC11096
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 168930..179589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL22_RS00830 (NCTC11096_00166)	rpmE	169368..169580 (+)	213	WP_005701793.1	50S ribosomal protein L31	-
DQL22_RS00835 (NCTC11096_00167)	-	169641..170327 (+)	687	WP_111300540.1	glycosyltransferase family 25 protein	-
DQL22_RS00840 (NCTC11096_00168)	-	170324..171352 (+)	1029	WP_111711161.1	glycosyltransferase family 9 protein	-
DQL22_RS00845 (NCTC11096_00169)	-	171357..172418 (+)	1062	WP_111300536.1	glycosyltransferase family 9 protein	-
DQL22_RS00850 (NCTC11096_00170)	mutM	172415..173230 (-)	816	WP_111300535.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
DQL22_RS00855 (NCTC11096_00171)	rpmG	173301..173471 (-)	171	WP_005544948.1	50S ribosomal protein L33	-
DQL22_RS00860 (NCTC11096_00172)	rpmB	173483..173719 (-)	237	WP_005542826.1	50S ribosomal protein L28	-
DQL22_RS00865 (NCTC11096_00173)	radC	173930..174589 (-)	660	WP_111300533.1	RadC family protein	Machinery gene
DQL22_RS00875 (NCTC11096_00175)	coaBC	174767..175966 (+)	1200	WP_111300531.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
DQL22_RS00880 (NCTC11096_00176)	dut	176015..176470 (+)	456	WP_005701802.1	dUTP diphosphatase	-
DQL22_RS00885 (NCTC11096_00177)	slmA	176470..177069 (+)	600	WP_005701804.1	nucleoid occlusion factor SlmA	-
DQL22_RS00890 (NCTC11096_00178)	-	177093..177311 (+)	219	WP_005701805.1	YheU family protein	-
DQL22_RS00895 (NCTC11096_00179)	crp	177349..177993 (+)	645	WP_005701806.1	cAMP-activated global transcriptional regulator CRP	Regulator
DQL22_RS00900 (NCTC11096_00180)	gorA	178114..179484 (-)	1371	WP_111300529.1	glutathione-disulfide reductase	-

Sequence

Protein

• Length: 219 a.a.
• Molecular weight: 24790.86 Da
• Isoelectric Point: 6.4848

>NTDB_id=1025850 DQL22_RS00865 WP_111300533.1 173930..174589(-) (radC) [Aggregatibacter aphrophilus strain NCTC11096]
MNEPLMPREKLLQYGAAALSDEELLAIFLRTGIKDCPVMQLSRNVLQHFGSLRGLITASQKQFCAVKGIGVTQFIQLQAC
TEMTRRYLLAELKEEHCFTSSDAVKMYLQTELEGLEREVFLVLFLDTQHRLIKQENLFLGTINQAMVYPREIIKEALACN
AAALILAHNHPSGVAEPSFSDRNITQKIKQAAELMEIRVLDHFVIGRGCYFSFAEQNLL

Nucleotide

• Length: 660 bp

>NTDB_id=1025850 DQL22_RS00865 WP_111300533.1 173930..174589(-) (radC) [Aggregatibacter aphrophilus strain NCTC11096]
ATGAATGAACCATTAATGCCAAGAGAAAAATTGTTGCAATACGGCGCGGCGGCGTTAAGCGATGAGGAGCTATTGGCCAT
TTTTTTACGTACGGGTATTAAGGATTGCCCCGTCATGCAATTGTCCCGCAATGTGTTGCAACATTTTGGTTCTTTACGCG
GCTTAATTACGGCAAGCCAAAAGCAATTTTGTGCCGTAAAAGGCATTGGCGTTACCCAGTTTATTCAGTTGCAGGCTTGC
ACCGAAATGACTAGGCGTTATTTGCTGGCGGAATTAAAGGAAGAACATTGTTTCACTTCAAGTGATGCGGTGAAAATGTA
TCTGCAAACCGAGCTGGAAGGTTTGGAACGAGAAGTCTTTTTAGTGTTGTTTTTGGATACGCAGCATCGTTTAATCAAGC
AGGAAAATCTTTTCCTTGGCACCATCAATCAGGCCATGGTGTATCCGCGGGAGATCATTAAAGAAGCCTTAGCCTGCAAT
GCAGCGGCGCTTATTTTGGCGCATAATCATCCTTCAGGCGTGGCTGAGCCGAGCTTTTCCGATCGAAATATTACACAAAA
AATCAAGCAGGCGGCTGAGTTAATGGAAATTCGGGTATTGGATCATTTTGTGATTGGTCGCGGCTGTTATTTTTCCTTTG
CGGAACAAAATCTTCTCTAA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (6-73)

• RadC-like JAB domain (RadC) (98-217)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	67.431	99.543	0.671
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	38.889	98.63	0.384
radC	Streptococcus gordonii str. Challis substr. CH1	37.788	99.087	0.374
radC	Streptococcus pneumoniae TIGR4	37.85	97.717	0.37
radC	Streptococcus pneumoniae R6	37.383	97.717	0.365
radC	Streptococcus pneumoniae D39	37.383	97.717	0.365