Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LF923_RS20310 Genome accession   NZ_CP162411
Coordinates   4521473..4522999 (+) Length   508 a.a.
NCBI ID   WP_226101312.1    Uniprot ID   A0AB39IB30
Organism   Dickeya oryzae strain A642-S2-A17     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4516473..4527999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF923_RS20285 (LF923_0020285) ilvE 4516660..4517586 (-) 927 WP_226101316.1 branched-chain-amino-acid transaminase -
  LF923_RS20290 (LF923_0020290) ilvM 4517610..4517867 (-) 258 WP_012886517.1 acetolactate synthase 2 small subunit -
  LF923_RS20295 (LF923_0020295) ilvG 4517885..4519531 (-) 1647 WP_210174828.1 acetolactate synthase 2 catalytic subunit -
  LF923_RS20300 (LF923_0020300) ilvL 4519671..4519769 (-) 99 WP_071526243.1 ilv operon leader peptide -
  LF923_RS20305 (LF923_0020305) - 4519902..4521125 (-) 1224 WP_038909264.1 MFS transporter -
  LF923_RS20310 (LF923_0020310) comM 4521473..4522999 (+) 1527 WP_226101312.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LF923_RS20315 (LF923_0020315) - 4523062..4523400 (-) 339 WP_012886521.1 DUF413 domain-containing protein -
  LF923_RS20320 (LF923_0020320) hdfR 4523521..4524348 (+) 828 WP_210177445.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55506.03 Da        Isoelectric Point: 7.9172

>NTDB_id=1025079 LF923_RS20310 WP_226101312.1 4521473..4522999(+) (comM) [Dickeya oryzae strain A642-S2-A17]
MTLAVTYTRATIGMQAPEVSIEVHISNGLPALTLVGLPETTVKEARDRVRSALINSGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIAGEKLAQYEFLGELGLSGSLRGVHGAIPAAMEAQKAGRGLILPEDNKLEMTLIPHGDTLLANHL
LHVCAFLQGETALLRGSEIPHTISPHTSAPDLKEIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPELN
DDEALESAAINSLIDIQPGMSQWRKRPFRSPHHTASITALVGGGVLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIVISRTRAKVCYPARFQLVAAMNPSPSGHYQGIHNRMPAQQILRYLNRLSGPFLDRFDLSIEVPLLPPGILRQQTR
IGEDSATVRARVFDARKRQLDRVGRINAQMKSDDIASYCRLNHEDATYLEEVMSKLGLSVRAWHRILKVSRTIADLGGEE
QIRRAHLSEALSYRCMDRLLIQLHKSLA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1025079 LF923_RS20310 WP_226101312.1 4521473..4522999(+) (comM) [Dickeya oryzae strain A642-S2-A17]
ATGACACTGGCAGTGACCTATACGCGAGCAACCATCGGGATGCAGGCACCGGAAGTCTCAATTGAAGTACACATCAGCAA
CGGTTTGCCGGCACTCACGCTGGTCGGTTTACCGGAAACAACGGTCAAAGAAGCACGAGACCGGGTACGCAGCGCACTAA
TCAACAGTGGCTTTACCTTTCCAGCCAAACGGATCACCGTCAATCTGGCTCCAGCAGATCTGCCGAAAGAAGGGGGTCGT
TATGACCTTCCTATCGCGCTAGCCATTCTGGCAGCCTCTGAGCAAATTGCTGGCGAGAAACTCGCACAATATGAGTTCCT
CGGTGAACTTGGGCTATCAGGCAGCCTGAGGGGCGTTCATGGCGCGATTCCTGCAGCCATGGAGGCGCAAAAAGCAGGGA
GGGGATTAATCCTGCCGGAAGACAACAAACTGGAAATGACCCTGATTCCCCACGGAGATACGCTACTGGCAAATCACCTG
CTACACGTTTGTGCTTTTCTGCAAGGGGAGACCGCCTTGTTGCGTGGCAGCGAAATCCCTCACACCATATCCCCCCATAC
CTCAGCGCCAGACCTGAAAGAAATCATTGGCCAGGAACAAGCGAAACGTGCACTGGAAATCGCGGCGGCAGGTGGACACA
ATTTGCTATTACTCGGCCCACCAGGAACCGGCAAAACGATGCTGGCCAGCCGCCTGCCCGGTTTACTGCCAGAGCTTAAT
GACGATGAAGCACTGGAAAGTGCAGCCATCAATAGCCTGATAGATATTCAGCCGGGTATGTCGCAATGGCGCAAAAGACC
ATTTCGTTCCCCCCACCATACCGCATCCATTACCGCTCTGGTCGGCGGTGGTGTGTTACCTAAGCCAGGAGAGATTTCAC
TGGCGCACAATGGTGTATTGTTTCTGGATGAACTGCCAGAATTTGAGCGGCGAGTGCTGGATTCACTGCGAGAACCGTTG
GAGTCAGGAGAAATAGTGATTTCTCGCACTCGTGCCAAGGTGTGTTATCCCGCACGCTTTCAGTTAGTCGCCGCCATGAA
CCCTAGCCCGTCAGGGCACTATCAAGGCATCCATAACCGTATGCCAGCACAACAAATTCTGCGCTATCTCAACAGGCTCT
CCGGCCCTTTTCTCGATCGTTTTGATTTATCTATTGAGGTGCCATTGCTACCACCAGGGATTCTCCGACAGCAGACACGT
ATCGGGGAAGACAGCGCAACGGTGAGGGCTCGGGTATTTGACGCCAGAAAACGGCAACTGGATCGCGTTGGCAGAATCAA
CGCACAAATGAAATCGGATGATATCGCCAGCTACTGCCGACTAAACCATGAAGACGCCACCTATCTGGAAGAGGTGATGA
GCAAGTTAGGGTTATCAGTCAGGGCCTGGCATCGGATCCTAAAGGTTTCACGTACGATTGCAGACCTTGGGGGAGAAGAG
CAGATACGTCGCGCTCACTTATCTGAAGCACTCAGTTATCGTTGTATGGACCGTCTGTTAATTCAACTACACAAAAGCCT
GGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.636

99.606

0.634
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Vibrio cholerae strain A1552

62.425

99.016

0.618
  comM Vibrio campbellii strain DS40M4

60.636

99.016

0.6
  comM Legionella pneumophila str. Paris

51.71

97.835

0.506
  comM Legionella pneumophila strain ERS1305867

51.71

97.835

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.351

99.803

0.463

Multiple sequence alignment