Detailed information NTG1024843

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: ABW635_RS00930
• Genome accession: NZ_CP162310
• Coordinates: 147782..148231 (+)
• Length: 149 a.a.
• NCBI ID: WP_119773875.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain ZQ2205
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 142782..153231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABW635_RS00900 (ABW635_00900)	-	144508..144873 (+)	366	WP_003098799.1	DUF1033 family protein	-
ABW635_RS00905 (ABW635_00905)	comYA	144934..145875 (+)	942	WP_003098801.1	competence type IV pilus ATPase ComGA	Machinery gene
ABW635_RS00910 (ABW635_00910)	comYB	145826..146842 (+)	1017	WP_003098804.1	competence type IV pilus assembly protein ComGB	Machinery gene
ABW635_RS00915 (ABW635_00915)	comGC/cglC	146843..147169 (+)	327	WP_003098806.1	competence type IV pilus major pilin ComGC	Machinery gene
ABW635_RS00920 (ABW635_00920)	comGD	147129..147557 (+)	429	WP_003098807.1	competence type IV pilus minor pilin ComGD	-
ABW635_RS00925 (ABW635_00925)	comGE	147529..147822 (+)	294	WP_031239176.1	competence type IV pilus minor pilin ComGE	-
ABW635_RS00930 (ABW635_00930)	comYF	147782..148231 (+)	450	WP_119773875.1	competence type IV pilus minor pilin ComGF	Machinery gene
ABW635_RS00935 (ABW635_00935)	comGG	148221..148574 (+)	354	WP_003098812.1	competence type IV pilus minor pilin ComGG	-
ABW635_RS00940 (ABW635_00940)	comYH	148636..149592 (+)	957	WP_003098815.1	class I SAM-dependent methyltransferase	Machinery gene
ABW635_RS00945 (ABW635_00945)	-	149649..150845 (+)	1197	WP_003098816.1	acetate kinase	-
ABW635_RS00950 (ABW635_00950)	-	150968..151171 (+)	204	WP_003098819.1	helix-turn-helix transcriptional regulator	-
ABW635_RS00955 (ABW635_00955)	-	151184..151636 (+)	453	WP_003098820.1	hypothetical protein	-
ABW635_RS00960 (ABW635_00960)	-	151646..152302 (+)	657	WP_003098822.1	CPBP family intramembrane glutamic endopeptidase	-
ABW635_RS00965 (ABW635_00965)	proC	152336..153106 (-)	771	WP_003098824.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 149 a.a.
• Molecular weight: 16976.98 Da
• Isoelectric Point: 10.2834

>NTDB_id=1024843 ABW635_RS00930 WP_119773875.1 147782..148231(+) (comYF) [Streptococcus iniae strain ZQ2205]
MKSIKKSLALRKISLKAFTLLECMLALVILSGAILVYQGMTKSLFFNMSYLVENDQDKWLLFSQQLRAELTGARFEKVEN
NKLYVAKEGKQIAFGLSKQGDFRKTAANGHGYHPMLLDLKDAKISHHNKEITVSITWKSGLERVFLYAF

Nucleotide

• Length: 450 bp

>NTDB_id=1024843 ABW635_RS00930 WP_119773875.1 147782..148231(+) (comYF) [Streptococcus iniae strain ZQ2205]
GTGAAAAGCATCAAAAAGTCTTTAGCCTTAAGAAAAATTAGCCTCAAGGCATTTACGCTTTTAGAGTGTATGTTGGCCTT
AGTGATATTGTCAGGTGCCATCTTAGTTTATCAAGGAATGACAAAATCTTTATTTTTTAACATGTCTTATTTGGTTGAAA
ATGATCAGGACAAGTGGTTGTTGTTTTCACAACAGTTGAGAGCTGAGTTAACAGGAGCTCGGTTTGAGAAGGTCGAAAAT
AATAAACTTTACGTAGCAAAAGAAGGAAAGCAGATAGCTTTTGGACTTTCAAAACAAGGAGATTTTCGAAAAACAGCAGC
AAATGGTCATGGTTATCATCCCATGCTTCTGGATCTTAAAGATGCTAAGATTAGTCATCATAATAAGGAGATTACAGTAA
GTATCACTTGGAAAAGTGGGCTAGAAAGAGTCTTTCTTTATGCTTTTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (53-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	52.174	92.617	0.483
comYF	Streptococcus mutans UA159	51.449	92.617	0.477
comGF/cglF	Streptococcus pneumoniae D39	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae Rx1	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae R6	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae TIGR4	46.617	89.262	0.416
comGF/cglF	Streptococcus mitis NCTC 12261	45.865	89.262	0.409
comGF	Lactococcus lactis subsp. cremoris KW2	43.478	92.617	0.403
comGF/cglF	Streptococcus mitis SK321	44.361	89.262	0.396