Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | ABW635_RS00940 | Genome accession | NZ_CP162310 |
| Coordinates | 148636..149592 (+) | Length | 318 a.a. |
| NCBI ID | WP_003098815.1 | Uniprot ID | - |
| Organism | Streptococcus iniae strain ZQ2205 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 143636..154592
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABW635_RS00900 (ABW635_00900) | - | 144508..144873 (+) | 366 | WP_003098799.1 | DUF1033 family protein | - |
| ABW635_RS00905 (ABW635_00905) | comYA | 144934..145875 (+) | 942 | WP_003098801.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABW635_RS00910 (ABW635_00910) | comYB | 145826..146842 (+) | 1017 | WP_003098804.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ABW635_RS00915 (ABW635_00915) | comGC/cglC | 146843..147169 (+) | 327 | WP_003098806.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABW635_RS00920 (ABW635_00920) | comGD | 147129..147557 (+) | 429 | WP_003098807.1 | competence type IV pilus minor pilin ComGD | - |
| ABW635_RS00925 (ABW635_00925) | comGE | 147529..147822 (+) | 294 | WP_031239176.1 | competence type IV pilus minor pilin ComGE | - |
| ABW635_RS00930 (ABW635_00930) | comYF | 147782..148231 (+) | 450 | WP_119773875.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| ABW635_RS00935 (ABW635_00935) | comGG | 148221..148574 (+) | 354 | WP_003098812.1 | competence type IV pilus minor pilin ComGG | - |
| ABW635_RS00940 (ABW635_00940) | comYH | 148636..149592 (+) | 957 | WP_003098815.1 | class I SAM-dependent methyltransferase | Machinery gene |
| ABW635_RS00945 (ABW635_00945) | - | 149649..150845 (+) | 1197 | WP_003098816.1 | acetate kinase | - |
| ABW635_RS00950 (ABW635_00950) | - | 150968..151171 (+) | 204 | WP_003098819.1 | helix-turn-helix transcriptional regulator | - |
| ABW635_RS00955 (ABW635_00955) | - | 151184..151636 (+) | 453 | WP_003098820.1 | hypothetical protein | - |
| ABW635_RS00960 (ABW635_00960) | - | 151646..152302 (+) | 657 | WP_003098822.1 | CPBP family intramembrane glutamic endopeptidase | - |
| ABW635_RS00965 (ABW635_00965) | proC | 152336..153106 (-) | 771 | WP_003098824.1 | pyrroline-5-carboxylate reductase | - |
| ABW635_RS00970 (ABW635_00970) | pepA | 153130..154197 (-) | 1068 | Protein_143 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35968.86 Da Isoelectric Point: 4.5568
>NTDB_id=1024844 ABW635_RS00940 WP_003098815.1 148636..149592(+) (comYH) [Streptococcus iniae strain ZQ2205]
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS
Nucleotide
Download Length: 957 bp
>NTDB_id=1024844 ABW635_RS00940 WP_003098815.1 148636..149592(+) (comYH) [Streptococcus iniae strain ZQ2205]
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
67.192 |
99.686 |
0.67 |
| comYH | Streptococcus mutans UA140 |
66.877 |
99.686 |
0.667 |