Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB3L00_RS16835 Genome accession   NZ_CP162300
Coordinates   3592136..3593623 (+) Length   495 a.a.
NCBI ID   WP_104159681.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SIMBA113     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3587136..3598623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3L00_RS16810 (AB3L00_16810) ribD 3588052..3589137 (-) 1086 WP_001292517.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AB3L00_RS16815 (AB3L00_16815) nrdR 3589153..3589611 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  AB3L00_RS16820 (AB3L00_16820) - 3589770..3591167 (-) 1398 WP_049594866.1 ammonium transporter -
  AB3L00_RS16825 (AB3L00_16825) glnK 3591225..3591563 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  AB3L00_RS16830 (AB3L00_16830) - 3591843..3592070 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  AB3L00_RS16835 (AB3L00_16835) comM 3592136..3593623 (+) 1488 WP_104159681.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB3L00_RS16840 (AB3L00_16840) - 3593638..3595072 (-) 1435 Protein_3284 PLP-dependent aminotransferase family protein -
  AB3L00_RS16845 (AB3L00_16845) - 3595184..3595960 (+) 777 WP_000845024.1 aldolase -
  AB3L00_RS16850 (AB3L00_16850) - 3595976..3596854 (+) 879 WP_049594868.1 dihydrodipicolinate synthase family protein -
  AB3L00_RS16855 (AB3L00_16855) - 3596897..3597718 (-) 822 WP_000975215.1 TorF family putative porin -
  AB3L00_RS16860 (AB3L00_16860) - 3597775..3597945 (-) 171 WP_000492279.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54434.32 Da        Isoelectric Point: 7.2940

>NTDB_id=1024809 AB3L00_RS16835 WP_104159681.1 3592136..3593623(+) (comM) [Acinetobacter baumannii strain SIMBA113]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQGCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHHVLRVARTIADLAQSEIIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1024809 AB3L00_RS16835 WP_104159681.1 3592136..3593623(+) (comM) [Acinetobacter baumannii strain SIMBA113]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGATTACCCTCTCTAACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCACCAGAAAGCATTAAACGCTATCAAAACCGCATATCGGGAC
CGTTACTCGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGGTTGTTTGAATCAGGCGCT
CTCACCAAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCACGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCTCAAAGTGAGATCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

48.795

100

0.491
  comM Legionella pneumophila str. Paris

48.795

100

0.491
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.2

100

0.467

Multiple sequence alignment