Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AB3L00_RS09610 | Genome accession | NZ_CP162300 |
| Coordinates | 2053660..2054040 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836915.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain SIMBA113 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2048660..2059040
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3L00_RS09580 (AB3L00_09580) | tadA | 2048779..2049282 (-) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
| AB3L00_RS09585 (AB3L00_09585) | - | 2049289..2050413 (-) | 1125 | WP_000982062.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AB3L00_RS09590 (AB3L00_09590) | ung | 2050410..2051123 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AB3L00_RS09595 (AB3L00_09595) | - | 2051174..2051770 (-) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| AB3L00_RS09600 (AB3L00_09600) | gspK | 2052000..2052959 (-) | 960 | WP_000301478.1 | type II secretion system minor pseudopilin GspK | - |
| AB3L00_RS09605 (AB3L00_09605) | xcpW | 2052959..2053660 (-) | 702 | WP_000594584.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AB3L00_RS09610 (AB3L00_09610) | xcpV | 2053660..2054040 (-) | 381 | WP_000836915.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AB3L00_RS09615 (AB3L00_09615) | - | 2054030..2054584 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| AB3L00_RS09620 (AB3L00_09620) | - | 2054594..2055202 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AB3L00_RS09625 (AB3L00_09625) | - | 2055240..2056013 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AB3L00_RS09630 (AB3L00_09630) | - | 2056031..2056372 (-) | 342 | WP_001183025.1 | PilZ domain-containing protein | - |
| AB3L00_RS09635 (AB3L00_09635) | - | 2056384..2057364 (-) | 981 | WP_001075412.1 | DNA polymerase III subunit delta' | - |
| AB3L00_RS09640 (AB3L00_09640) | kdsB | 2057376..2058137 (-) | 762 | WP_000680696.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=1024789 AB3L00_RS09610 WP_000836915.1 2053660..2054040(-) (xcpV) [Acinetobacter baumannii strain SIMBA113]
MKSKGFTLLEVMVALAIFAVAAVALTKVATQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGEIWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVATQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGEIWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1024789 AB3L00_RS09610 WP_000836915.1 2053660..2054040(-) (xcpV) [Acinetobacter baumannii strain SIMBA113]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAACGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAATTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAACGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAATTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
98.413 |
100 |
0.984 |