Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   AB3L00_RS02365 Genome accession   NZ_CP162300
Coordinates   482655..483539 (+) Length   294 a.a.
NCBI ID   WP_000914771.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SIMBA113     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477655..488539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3L00_RS02340 (AB3L00_02340) - 478053..479300 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  AB3L00_RS02345 (AB3L00_02345) wrbA 479588..480181 (+) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  AB3L00_RS02350 (AB3L00_02350) - 480234..480809 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  AB3L00_RS02355 (AB3L00_02355) - 480882..481595 (-) 714 WP_000201544.1 DUF3108 domain-containing protein -
  AB3L00_RS02360 (AB3L00_02360) - 481753..482424 (-) 672 WP_368218348.1 hypothetical protein -
  AB3L00_RS02365 (AB3L00_02365) tonB2 482655..483539 (+) 885 WP_000914771.1 energy transducer TonB Machinery gene
  AB3L00_RS02370 (AB3L00_02370) ybeY 483629..484105 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  AB3L00_RS02375 (AB3L00_02375) - 484115..485203 (-) 1089 WP_000122983.1 PhoH family protein -
  AB3L00_RS02380 (AB3L00_02380) miaB 485241..486692 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33573.46 Da        Isoelectric Point: 9.0947

>NTDB_id=1024782 AB3L00_RS02365 WP_000914771.1 482655..483539(+) (tonB2) [Acinetobacter baumannii strain SIMBA113]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIHPTEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1024782 AB3L00_RS02365 WP_000914771.1 482655..483539(+) (tonB2) [Acinetobacter baumannii strain SIMBA113]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCATCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGC
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
AAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.98

100

0.99

Multiple sequence alignment