Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   AB1F57_RS04345 Genome accession   NZ_CP162268
Coordinates   854179..855120 (+) Length   313 a.a.
NCBI ID   WP_170239501.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 849179..860120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS04330 (AB1F57_04330) - 851158..851538 (-) 381 WP_367986136.1 GNAT family N-acetyltransferase -
  AB1F57_RS04335 (AB1F57_04335) - 851951..853729 (+) 1779 Protein_820 reverse transcriptase domain-containing protein -
  AB1F57_RS04340 (AB1F57_04340) - 853828..854118 (-) 291 WP_367986137.1 hypothetical protein -
  AB1F57_RS04345 (AB1F57_04345) coiA 854179..855120 (+) 942 WP_170239501.1 competence protein CoiA family protein Machinery gene
  AB1F57_RS04350 (AB1F57_04350) pepF 855193..856995 (+) 1803 WP_167785688.1 oligoendopeptidase F Regulator
  AB1F57_RS04355 (AB1F57_04355) - 856997..857443 (+) 447 WP_167785687.1 hypothetical protein -
  AB1F57_RS04360 (AB1F57_04360) - 857456..857989 (+) 534 WP_167785686.1 DUF6630 family protein -
  AB1F57_RS04365 (AB1F57_04365) - 858040..858489 (-) 450 WP_105138268.1 DUF1694 domain-containing protein -
  AB1F57_RS04370 (AB1F57_04370) eno 858641..859948 (+) 1308 WP_099871461.1 surface-displayed alpha-enolase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36345.63 Da        Isoelectric Point: 8.5294

>NTDB_id=1024689 AB1F57_RS04345 WP_170239501.1 854179..855120(+) (coiA) [Streptococcus sp. ZY1909104]
MLVAVNQKGQTVNLLEKPEVKKEDYFCPACAGKVRYRSGKILRSHFAHQTLRDCDFWSENESAQHLSLKSSLYQWLQGQE
EVELEAYLPATKQVADLLVNQQLALEVQCSSLSISRLQERTAAYQQAGMAVLWLLGKDLWLGERLTNLHKQFLYFSRNMG
FHLWELDAEKEELRLHYLIHEDWYGKVHKLSKVFPIGQGNLLAILRSPFAKQALSHFTCLSDQDLLDYVAKQLYYRVPKW
MNLQAEAYQQGKNLLSQSLADFYPQIRLPRSAIGFAQIRQDLSSIYPAFDQYYAGVKDKRQQSVYPPAVYWKN

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1024689 AB1F57_RS04345 WP_170239501.1 854179..855120(+) (coiA) [Streptococcus sp. ZY1909104]
ATGTTAGTAGCCGTCAATCAAAAAGGACAAACCGTCAATCTTTTGGAAAAACCAGAGGTGAAGAAGGAAGATTATTTCTG
CCCAGCCTGTGCTGGAAAGGTCCGTTATCGGTCTGGAAAAATTCTGCGTTCGCATTTTGCCCATCAAACCCTGCGGGATT
GCGATTTCTGGTCCGAGAATGAGTCCGCCCAGCACCTGAGCCTCAAGTCCAGTCTGTATCAGTGGTTACAGGGTCAGGAA
GAAGTAGAGTTGGAGGCCTATCTGCCTGCAACCAAGCAGGTGGCAGATCTTTTAGTCAATCAGCAACTGGCCCTGGAAGT
TCAGTGTTCCAGTCTGTCCATTTCACGCTTGCAGGAGCGGACTGCTGCCTATCAGCAGGCAGGTATGGCTGTTCTGTGGC
TTCTGGGCAAAGACCTCTGGCTTGGAGAACGATTGACAAATCTCCACAAGCAATTTCTGTATTTTAGTAGGAATATGGGT
TTTCATCTATGGGAGTTGGATGCGGAGAAGGAGGAGTTGCGGTTGCACTACCTGATTCATGAGGACTGGTATGGCAAGGT
CCACAAGTTGAGCAAGGTCTTTCCAATTGGTCAAGGCAATTTGTTGGCTATTCTGCGGTCACCATTTGCCAAGCAAGCCT
TGTCCCATTTTACTTGTTTGAGTGATCAGGATTTGCTGGATTATGTTGCCAAACAGCTCTATTACCGCGTACCCAAGTGG
ATGAACTTGCAGGCAGAGGCCTACCAGCAAGGGAAAAACTTGCTCAGTCAGTCCTTGGCTGACTTCTATCCCCAAATCCG
CCTGCCCCGCTCTGCTATTGGCTTTGCACAAATCCGCCAAGACTTAAGCTCCATCTACCCAGCCTTTGACCAGTATTATG
CAGGGGTCAAGGACAAGCGACAGCAGTCGGTCTATCCACCAGCGGTTTATTGGAAAAACTAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.698

99.361

0.534
  coiA Streptococcus pneumoniae TIGR4

51.447

99.361

0.511
  coiA Streptococcus pneumoniae Rx1

51.447

99.361

0.511
  coiA Streptococcus pneumoniae D39

51.447

99.361

0.511
  coiA Streptococcus pneumoniae R6

51.447

99.361

0.511
  coiA Lactococcus lactis subsp. cremoris KW2

40.308

100

0.419

Multiple sequence alignment