Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DQN42_RS02645 Genome accession   NZ_LS483436
Coordinates   521549..522235 (+) Length   228 a.a.
NCBI ID   WP_003078190.1    Uniprot ID   -
Organism   Streptococcus intermedius strain NCTC11324     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 516549..527235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN42_RS02625 (NCTC11324_00532) - 516687..517319 (+) 633 WP_003028311.1 DUF421 domain-containing protein -
  DQN42_RS02630 (NCTC11324_00533) - 517682..517942 (-) 261 WP_003043441.1 SemiSWEET family transporter -
  DQN42_RS02635 (NCTC11324_00534) metG 518189..520186 (+) 1998 WP_003078166.1 methionine--tRNA ligase -
  DQN42_RS02640 (NCTC11324_00535) - 520276..521457 (-) 1182 WP_003078207.1 DUF2974 domain-containing protein -
  DQN42_RS02645 (NCTC11324_00536) braR 521549..522235 (+) 687 WP_003078190.1 response regulator transcription factor Regulator
  DQN42_RS02650 (NCTC11324_00537) - 522219..523199 (+) 981 WP_003078184.1 sensor histidine kinase -
  DQN42_RS02655 (NCTC11324_00538) - 523322..524080 (+) 759 WP_003078156.1 TraX family protein -
  DQN42_RS02660 (NCTC11324_00539) - 524298..525077 (+) 780 WP_009568230.1 ABC transporter ATP-binding protein -
  DQN42_RS02665 (NCTC11324_00540) - 525058..527037 (+) 1980 WP_003077109.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26325.67 Da        Isoelectric Point: 5.1543

>NTDB_id=1024690 DQN42_RS02645 WP_003078190.1 521549..522235(+) (braR) [Streptococcus intermedius strain NCTC11324]
MHKILLVEDDAVIRQQVKKMLEQWGFEVIAVADFMQVLTIFVKEEPHLVLMDIGLPLFNGYHWCQEIRKISKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDNNVLLAKVQGLLRRSYEFGTDQSLLEYHGVILNLKSMDMMYDGEVITLTKNEFQIL
RVLFEHSGSIVSRDDLMKELWNSDFFIDDNTLSVNVARLRKKLEEVGLKNFIETKKGIGYRLINGTSE

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1024690 DQN42_RS02645 WP_003078190.1 521549..522235(+) (braR) [Streptococcus intermedius strain NCTC11324]
ATGCACAAGATATTATTAGTGGAAGACGATGCCGTCATTCGTCAACAAGTCAAAAAAATGCTGGAACAATGGGGATTTGA
GGTGATTGCTGTAGCGGATTTTATGCAGGTGCTGACGATTTTTGTCAAGGAAGAACCGCATCTAGTCCTGATGGATATTG
GTCTACCGTTGTTTAATGGTTATCATTGGTGCCAAGAAATTCGCAAGATTTCTAAAGTGCCTATTATGTTTTTATCTTCA
CGTGATCAGGCGATGGATATTGTCATGGCGATTAACATGGGCGGAGATGATTTTGTCACCAAGCCATTTGACAATAATGT
CTTGCTGGCTAAGGTTCAAGGACTCTTGCGTCGTTCGTATGAATTTGGGACAGATCAAAGTTTGTTGGAATACCATGGGG
TTATTCTCAATCTCAAGTCCATGGATATGATGTATGATGGAGAAGTGATTACGTTAACGAAAAATGAATTTCAAATTCTG
CGTGTGCTATTTGAGCATTCTGGCAGTATTGTTTCGCGTGATGATCTCATGAAAGAACTTTGGAATAGTGATTTCTTTAT
TGATGATAATACCTTATCTGTGAATGTTGCACGGCTGCGCAAGAAATTAGAAGAAGTCGGTCTCAAGAATTTCATTGAAA
CAAAGAAAGGTATAGGGTATAGGTTAATCAATGGAACATCAGAATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

49.091

96.491

0.474

Multiple sequence alignment