Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB1F57_RS04350 Genome accession   NZ_CP162268
Coordinates   855193..856995 (+) Length   600 a.a.
NCBI ID   WP_167785688.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 850193..861995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS04330 (AB1F57_04330) - 851158..851538 (-) 381 WP_367986136.1 GNAT family N-acetyltransferase -
  AB1F57_RS04335 (AB1F57_04335) - 851951..853729 (+) 1779 Protein_820 reverse transcriptase domain-containing protein -
  AB1F57_RS04340 (AB1F57_04340) - 853828..854118 (-) 291 WP_367986137.1 hypothetical protein -
  AB1F57_RS04345 (AB1F57_04345) coiA 854179..855120 (+) 942 WP_170239501.1 competence protein CoiA family protein Machinery gene
  AB1F57_RS04350 (AB1F57_04350) pepF 855193..856995 (+) 1803 WP_167785688.1 oligoendopeptidase F Regulator
  AB1F57_RS04355 (AB1F57_04355) - 856997..857443 (+) 447 WP_167785687.1 hypothetical protein -
  AB1F57_RS04360 (AB1F57_04360) - 857456..857989 (+) 534 WP_167785686.1 DUF6630 family protein -
  AB1F57_RS04365 (AB1F57_04365) - 858040..858489 (-) 450 WP_105138268.1 DUF1694 domain-containing protein -
  AB1F57_RS04370 (AB1F57_04370) eno 858641..859948 (+) 1308 WP_099871461.1 surface-displayed alpha-enolase -
  AB1F57_RS04375 (AB1F57_04375) - 860927..860928 (-) 2 WP_367985658.1 IS630 family transposase -
  AB1F57_RS04380 (AB1F57_04380) - 861495..861935 (+) 441 WP_105138267.1 arsenate reductase ArsC -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68950.98 Da        Isoelectric Point: 4.5186

>NTDB_id=1024690 AB1F57_RS04350 WP_167785688.1 855193..856995(+) (pepF) [Streptococcus sp. ZY1909104]
MSKQRHEIEEKYQWDLTTIFPTDEAWESELAELQAETEKTKDFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKALALYSAFSQAFAFYEPEFMAITEEQLEAFKAEEPALNQYSHQFEKLLAAKDHILSQEVEEVLAAT
SEIFDAPSETFSVLDNASLRFPEIADEDGKLVPLSHGNYISFMESKNREVRQEAYEALYETYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSGRHAALSANFIPESVYDTLVSAVNKHLPLLHRYINLRKKLLGIDDLRMYDMYTPLSSAETKVSYEEALS
TCADTLTIFGDEYAAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRQN
QPYVYGHYSIFLAEIASTTNENLLTEKLLAEVEDDKTRFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNQLYGELNEKYYGLSAEENPLIQYEWARIPHFYYNFYVYQYSTGFAAASALADKIVNGSPEDKENYLNYLKAGSSDYPL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1024690 AB1F57_RS04350 WP_167785688.1 855193..856995(+) (pepF) [Streptococcus sp. ZY1909104]
ATGTCAAAACAACGTCATGAAATCGAAGAAAAGTACCAGTGGGATTTGACCACCATTTTCCCAACAGATGAGGCTTGGGA
ATCGGAATTAGCTGAACTCCAAGCAGAAACAGAAAAAACAAAGGACTTTGCAGGTCACCTCTTGGACTCAGCTAAGAGCC
TCTTGGAAATCAGTGAAACCCAGCTTGGCCTCATGCGTCGCATTGAAAAACTCTATGTTTATGCGTCTATGAAGAACGAT
CAGGATACTCGCGAAGGTAAGTACCAGGAATTTCAAGCCAAGGCTTTGGCCCTTTATTCAGCCTTTTCACAAGCCTTTGC
CTTCTATGAGCCAGAATTTATGGCCATTACCGAGGAGCAGCTAGAGGCTTTCAAGGCAGAAGAGCCAGCTCTTAACCAGT
ACAGCCACCAGTTTGAAAAACTCTTGGCAGCCAAGGACCATATCTTGTCACAGGAAGTAGAAGAAGTCCTTGCAGCGACC
AGCGAGATTTTCGATGCACCGTCTGAAACCTTCTCTGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCGCAGACGA
GGATGGCAAGTTGGTGCCCCTCTCTCACGGCAACTACATCTCCTTCATGGAGTCCAAAAACCGCGAAGTGCGTCAAGAAG
CTTACGAGGCTCTCTACGAAACCTACGAGCAGTTCCAACATACCTACGCAAAGACCTTGCAGTCTAACGTTAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGATTCAGGCCGTCACGCAGCACTTTCTGCTAACTTTATCCCAGAGTCCGTTTA
CGATACATTAGTATCAGCAGTCAACAAGCATCTCCCGCTCTTGCACCGCTATATCAATTTGCGTAAGAAACTCTTGGGTA
TCGATGACCTGAGAATGTACGATATGTACACACCGCTTTCTAGCGCAGAGACCAAAGTAAGCTACGAAGAAGCTCTTTCT
ACCTGTGCGGATACCTTGACTATTTTTGGTGATGAGTACGCAGCTATCGTCAAAGAAGCTTTTGAAAACCGTTGGATTGA
TGTCCATGTCAACGAAGGCAAGCGTTCAGGTGCCTATTCAGGTGGTGCTTACGATACTAATGCCTTCATGCTCCTCAACT
GGCAGGACAATTTGGACAATATGTACACCCTGATTCACGAAACAGGACATTCACTTCATTCTATGTTGACTCGTCAGAAC
CAGCCTTATGTCTATGGGCACTATTCTATTTTCTTGGCTGAGATTGCGTCAACAACCAACGAAAATCTACTGACAGAGAA
ACTCTTGGCAGAAGTGGAAGATGACAAGACCCGCTTTGCCATTCTCAATCACTACCTCGACGGCTTCCGTGGAACGGTCT
TCCGTCAAACCCAATTTGCTGAGTTTGAGCAGGCTATTTACAAGGCTGACCAGGAAGGCCAAGTCTTGACTGCTGATTTC
CTCAACCAGCTTTACGGTGAACTCAATGAGAAGTATTATGGCTTGTCTGCTGAAGAAAATCCATTGATTCAGTATGAGTG
GGCTCGTATTCCACATTTCTATTACAATTTCTATGTTTACCAATATTCAACTGGCTTTGCGGCAGCGTCTGCTTTGGCAG
ACAAGATTGTCAATGGTAGCCCAGAGGACAAGGAAAACTACCTCAACTATCTCAAGGCTGGTAGCTCTGATTATCCACTC
AATGTCATTGCAAAAGCTGGCGTGGATATGACCAAGGAAGACTATCTCAATGATGCCTTCAAGGTCTTTGAAGCCCGCTT
GACAGAGTTGGAAGCTCTTGTTGAGAAAGGTGTGCACCTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.667

100

0.687

Multiple sequence alignment