Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQN79_RS00770 Genome accession   NZ_LS483435
Coordinates   149463..149984 (-) Length   173 a.a.
NCBI ID   WP_041961521.1    Uniprot ID   A0A0B5CJL8
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 144463..154984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS00755 (NCTC11050_00139) - 144485..146524 (-) 2040 WP_041961520.1 integrase -
  DQN79_RS00760 (NCTC11050_00140) - 146527..148047 (-) 1521 WP_174428823.1 site-specific integrase -
  DQN79_RS00765 (NCTC11050_00141) - 148034..148990 (-) 957 WP_227717128.1 site-specific integrase -
  DQN79_RS00770 (NCTC11050_00142) ssb 149463..149984 (-) 522 WP_041961521.1 single-stranded DNA-binding protein Machinery gene
  DQN79_RS00775 (NCTC11050_00143) - 149988..151370 (-) 1383 WP_040665539.1 MFS transporter -
  DQN79_RS00780 (NCTC11050_00144) trpS 151647..152657 (+) 1011 WP_041961522.1 tryptophan--tRNA ligase -
  DQN79_RS00785 (NCTC11050_00145) - 152830..153513 (+) 684 WP_144340428.1 DUF3298 domain-containing protein -
  DQN79_RS00790 (NCTC11050_00146) acpS 153604..153981 (+) 378 WP_041961638.1 holo-ACP synthase -
  DQN79_RS11985 - 154039..154149 (-) 111 Protein_148 IS5/IS1182 family transposase -
  DQN79_RS00795 (NCTC11050_00147) comP 154160..154627 (-) 468 WP_041961523.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19526.62 Da        Isoelectric Point: 5.2954

>NTDB_id=1024608 DQN79_RS00770 WP_041961521.1 149463..149984(-) (ssb) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MSLNKVILIGNLGRDPEVRYMPNGEAVCNFSIATSETWNDRQTGQRQERTEWHNITLYRRLAEVAGQYLKKGSQVYIEGR
IQSRKYTGKDGIERTAYDIIGSEMKMLGGRQSSGSSAPYDEGYQPVPQQQYQQQPYQAQQQPAYNSEPPAAPRRQAPAAP
AQPVDDIDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1024608 DQN79_RS00770 WP_041961521.1 149463..149984(-) (ssb) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGTCCCTAAACAAAGTCATCCTTATCGGCAACCTCGGCCGCGACCCCGAAGTGCGCTACATGCCCAACGGCGAGGCCGT
CTGCAACTTTTCCATCGCCACCAGCGAAACATGGAACGACCGACAAACCGGACAGCGTCAGGAACGCACCGAATGGCACA
ACATCACCCTCTACCGCCGCTTGGCCGAAGTGGCGGGACAATACCTGAAAAAAGGCAGCCAGGTTTACATTGAAGGCCGC
ATCCAAAGCCGCAAATACACCGGCAAAGACGGCATCGAGCGCACCGCTTACGACATCATCGGCAGCGAAATGAAAATGCT
CGGCGGACGGCAAAGCAGCGGCAGCAGCGCGCCTTACGACGAAGGCTACCAGCCTGTACCGCAACAGCAATACCAGCAAC
AGCCCTACCAGGCGCAGCAGCAGCCCGCCTACAACAGCGAGCCGCCCGCCGCGCCGCGCCGCCAGGCTCCGGCCGCACCC
GCCCAGCCCGTGGACGACATCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5CJL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

72.472

100

0.746
  ssb Neisseria meningitidis MC58

71.91

100

0.74
  ssb Vibrio cholerae strain A1552

50.847

100

0.52
  ssb Glaesserella parasuis strain SC1401

47.458

100

0.486