Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   DQN79_RS00795 Genome accession   NZ_LS483435
Coordinates   154160..154627 (-) Length   155 a.a.
NCBI ID   WP_041961523.1    Uniprot ID   A0A0B5CJM4
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 149160..159627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS00770 (NCTC11050_00142) ssb 149463..149984 (-) 522 WP_041961521.1 single-stranded DNA-binding protein Machinery gene
  DQN79_RS00775 (NCTC11050_00143) - 149988..151370 (-) 1383 WP_040665539.1 MFS transporter -
  DQN79_RS00780 (NCTC11050_00144) trpS 151647..152657 (+) 1011 WP_041961522.1 tryptophan--tRNA ligase -
  DQN79_RS00785 (NCTC11050_00145) - 152830..153513 (+) 684 WP_144340428.1 DUF3298 domain-containing protein -
  DQN79_RS00790 (NCTC11050_00146) acpS 153604..153981 (+) 378 WP_041961638.1 holo-ACP synthase -
  DQN79_RS11985 - 154039..154149 (-) 111 Protein_148 IS5/IS1182 family transposase -
  DQN79_RS00795 (NCTC11050_00147) comP 154160..154627 (-) 468 WP_041961523.1 type IV pilin protein Machinery gene
  DQN79_RS00800 (NCTC11050_00148) - 154705..155091 (-) 387 WP_003769618.1 type IV pilin protein -
  DQN79_RS00810 - 155972..156487 (-) 516 Protein_151 hemagglutinin repeat-containing protein -
  DQN79_RS12455 - 156477..156677 (+) 201 WP_081456054.1 replication initiator protein A -
  DQN79_RS00820 (NCTC11050_00150) - 156841..157500 (-) 660 WP_003769622.1 hypothetical protein -
  DQN79_RS00825 (NCTC11050_00151) - 157517..158164 (-) 648 WP_003769624.1 TniB family NTP-binding protein -
  DQN79_RS00830 (NCTC11050_00152) - 158164..159195 (-) 1032 WP_227717129.1 Mu transposase C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17417.72 Da        Isoelectric Point: 8.4589

>NTDB_id=1024609 DQN79_RS00795 WP_041961523.1 154160..154627(-) (comP) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MNRQYSISGFSLYEILFAVAVMAVLATIALPAYQRYVKDARLKQAASALQDNAHTLERFYAQHKSFKKNSTTWADLAVTQ
NDYFCLRMQGNARGALSDRFTIKAVALNKDSEPRVLKINQDMILTLCETSSSSCSESNTYFSNANGTDRNCVIYE

Nucleotide


Download         Length: 468 bp        

>NTDB_id=1024609 DQN79_RS00795 WP_041961523.1 154160..154627(-) (comP) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGAATCGGCAGTATTCCATTTCCGGCTTCAGTTTGTATGAAATATTGTTTGCCGTTGCGGTGATGGCTGTTTTGGCTAC
TATTGCCCTGCCTGCCTATCAGCGTTATGTCAAAGACGCCCGGTTAAAACAGGCAGCTTCGGCCTTGCAGGACAATGCGC
ACACACTTGAACGGTTTTATGCCCAGCATAAAAGTTTCAAAAAAAATTCCACCACTTGGGCAGATTTGGCCGTTACACAA
AATGACTATTTCTGCCTAAGGATGCAGGGGAATGCACGCGGTGCCCTTTCGGATCGCTTTACCATCAAGGCCGTCGCCTT
AAACAAAGACAGCGAACCGAGGGTGTTGAAAATCAATCAGGACATGATACTGACACTCTGCGAAACCAGCTCTTCTTCCT
GTTCGGAAAGCAATACTTATTTCAGCAACGCCAACGGCACCGACAGAAACTGCGTCATTTACGAATAG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5CJM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

41.259

92.258

0.381
  comP Neisseria meningitidis 8013

40.136

94.839

0.381
  comP Neisseria subflava NJ9703

39.31

93.548

0.368