Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   DQN79_RS00305 Genome accession   NZ_LS483435
Coordinates   65045..65551 (-) Length   168 a.a.
NCBI ID   WP_082019647.1    Uniprot ID   -
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 60045..70551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS00295 (NCTC11050_00060) - 60190..62067 (-) 1878 WP_041961507.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  DQN79_RS00300 (NCTC11050_00061) pilQ 62878..65013 (-) 2136 WP_003774174.1 type IV pilus secretin PilQ Machinery gene
  DQN79_RS00305 (NCTC11050_00062) pilP 65045..65551 (-) 507 WP_082019647.1 pilus assembly protein PilP Machinery gene
  DQN79_RS00310 (NCTC11050_00063) - 65570..66211 (-) 642 WP_003774170.1 type 4a pilus biogenesis protein PilO -
  DQN79_RS00315 (NCTC11050_00064) pilN 66198..66857 (-) 660 WP_003774168.1 PilN domain-containing protein Machinery gene
  DQN79_RS00320 (NCTC11050_00065) pilM 66860..67951 (-) 1092 WP_041961633.1 type IV pilus assembly protein PilM -
  DQN79_RS00325 (NCTC11050_00066) - 68101..70509 (+) 2409 WP_003774164.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18515.92 Da        Isoelectric Point: 4.6688

>NTDB_id=1024605 DQN79_RS00305 WP_082019647.1 65045..65551(-) (pilP) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MIKKLCLLSSMLLLSACDAEPGDLREWVDATKKEAEGKFTPVDIPQGAPQLTYTPPMQPTLDAFNSKRLSTNQNGVNAPD
LNRPKEVLEAFGLDSIKYVGSFNQKGKISAFVEVDGHVYTVGKGNYIGQNYGRITNIRADAIDITELVEDAYGNWTFRQS
ELILNGSE

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1024605 DQN79_RS00305 WP_082019647.1 65045..65551(-) (pilP) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGATAAAAAAACTTTGTTTGTTGTCAAGTATGTTACTTTTGTCAGCGTGTGATGCGGAGCCAGGAGATCTTCGCGAATG
GGTTGATGCAACAAAAAAAGAGGCTGAGGGAAAGTTTACTCCTGTGGATATTCCTCAAGGGGCACCTCAGTTGACTTATA
CCCCTCCTATGCAACCAACATTAGATGCGTTTAATAGTAAAAGGTTGAGTACTAATCAAAATGGTGTTAATGCTCCAGAT
TTGAATAGACCAAAAGAGGTGTTAGAGGCTTTTGGATTAGACAGCATTAAATATGTTGGCTCATTTAATCAAAAAGGTAA
AATATCAGCCTTTGTTGAGGTAGATGGTCATGTTTACACTGTAGGGAAAGGTAATTATATTGGTCAAAACTATGGGCGAA
TCACAAATATAAGGGCTGATGCAATAGATATAACAGAATTGGTTGAGGATGCTTATGGTAATTGGACTTTTCGCCAATCT
GAATTAATATTAAATGGTTCAGAATAG

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(23-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

45.509

99.405

0.452

Multiple sequence alignment