Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3N44_RS11500 Genome accession   NZ_CP162195
Coordinates   2397894..2398424 (-) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter chuandaensis strain STK53-E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2392894..2403424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N44_RS11475 (AB3N44_11460) - 2393515..2394186 (-) 672 WP_252003084.1 glutathione S-transferase family protein -
  AB3N44_RS11480 (AB3N44_11465) soxR 2394474..2394932 (-) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  AB3N44_RS11485 (AB3N44_11470) soxS 2395031..2395357 (+) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  AB3N44_RS11490 (AB3N44_11475) - 2395364..2396929 (-) 1566 WP_333017590.1 EAL domain-containing protein -
  AB3N44_RS11495 (AB3N44_11480) - 2397552..2397833 (+) 282 WP_008503385.1 YjcB family protein -
  AB3N44_RS11500 (AB3N44_11485) ssb 2397894..2398424 (-) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB3N44_RS11505 (AB3N44_11490) uvrA 2398676..2401498 (+) 2823 WP_333017589.1 excinuclease ABC subunit UvrA -
  AB3N44_RS11510 (AB3N44_11495) - 2401502..2401855 (-) 354 WP_333017588.1 MmcQ/YjbR family DNA-binding protein -
  AB3N44_RS11515 (AB3N44_11500) - 2401858..2402274 (-) 417 WP_217480638.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AB3N44_RS11520 (AB3N44_11505) aphA 2402387..2403100 (-) 714 WP_333017587.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=1024605 AB3N44_RS11500 WP_006810470.1 2397894..2398424(-) (ssb) [Enterobacter chuandaensis strain STK53-E]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1024605 AB3N44_RS11500 WP_006810470.1 2397894..2398424(-) (ssb) [Enterobacter chuandaensis strain STK53-E]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCTGGCGGTGGTCAGAACCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCACAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGACTTCGACGACGACATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369

Multiple sequence alignment