Detailed information NTG1024503

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB3N53_RS21690
• Genome accession: NZ_CP162169
• Coordinates: 4561151..4561948 (+)
• Length: 265 a.a.
• NCBI ID: WP_004858028.1
• Uniprot ID: -
• Organism: Raoultella ornithinolytica strain STS50-E
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4556151..4566948

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3N53_RS21655 (AB3N53_21675)	gspH	4556292..4556777 (+)	486	WP_233470822.1	type II secretion system minor pseudopilin GspH	-
AB3N53_RS21660 (AB3N53_21680)	gspI	4556774..4557139 (+)	366	WP_004858044.1	type II secretion system minor pseudopilin GspI	-
AB3N53_RS21665 (AB3N53_21685)	gspJ	4557151..4557735 (+)	585	WP_004858042.1	type II secretion system minor pseudopilin GspJ	-
AB3N53_RS21670 (AB3N53_21690)	gspK	4557732..4558718 (+)	987	WP_004858039.1	type II secretion system minor pseudopilin GspK	-
AB3N53_RS21675 (AB3N53_21695)	gspL	4558705..4559907 (+)	1203	WP_004858036.1	type II secretion system protein GspL	-
AB3N53_RS21680 (AB3N53_21700)	gspM	4559900..4560406 (+)	507	WP_004858033.1	type II secretion system protein GspM	-
AB3N53_RS21685 (AB3N53_21705)	-	4560396..4561136 (+)	741	WP_004858030.1	type II secretion system protein N	-
AB3N53_RS21690 (AB3N53_21710)	pilD	4561151..4561948 (+)	798	WP_004858028.1	A24 family peptidase	Machinery gene
AB3N53_RS21695 (AB3N53_21715)	hrpB	4561969..4564398 (-)	2430	WP_004858024.1	ATP-dependent helicase HrpB	-
AB3N53_RS21700 (AB3N53_21720)	thpR	4564471..4565007 (+)	537	WP_004858022.1	RNA 2',3'-cyclic phosphodiesterase	-
AB3N53_RS21705 (AB3N53_21725)	sfsA	4565007..4565723 (+)	717	WP_004858020.1	DNA/RNA nuclease SfsA	-
AB3N53_RS21710 (AB3N53_21730)	dksA	4565888..4566343 (+)	456	WP_004858018.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29315.95 Da
• Isoelectric Point: 8.4762

>NTDB_id=1024503 AB3N53_RS21690 WP_004858028.1 4561151..4561948(+) (pilD) [Raoultella ornithinolytica strain STS50-E]
MTLLSAFSLQFPLLWGGLLFIFGLTFGSFFNVVIYRLPLMMQQEESARFNLCVPASFCPQCQRPIIWRDNIPLLSYLSLK
GRARCCQAPISQRYPLTELASGLLFVLTGYLLTPGLPLLGGLILLSTLLVLAIIDGQTQLLPDRLTLPLLWAGLLFNLNG
TFVPLSEAVIGAMTGYLSLWTVYWLFRLLTGKEALGYGDFKLLAALGAWSGWQILPQTLLCASASGLIWTLLQRRITLQS
LDQPLAFGPWLALAGSGLFLWTQTL

Nucleotide

• Length: 798 bp

>NTDB_id=1024503 AB3N53_RS21690 WP_004858028.1 4561151..4561948(+) (pilD) [Raoultella ornithinolytica strain STS50-E]
ATGACGCTACTGAGCGCATTTTCGTTGCAGTTCCCCCTGTTATGGGGCGGATTGTTGTTTATTTTCGGCCTGACGTTTGG
CAGCTTTTTTAACGTGGTTATCTACCGTTTGCCGCTGATGATGCAGCAGGAAGAGTCCGCACGATTCAACCTGTGCGTTC
CCGCCTCCTTCTGCCCCCAGTGCCAGCGGCCCATCATCTGGCGGGATAATATTCCGCTGCTCAGCTATCTCTCACTCAAA
GGGCGCGCCCGCTGCTGCCAGGCGCCCATTTCTCAGCGCTATCCGCTGACGGAACTGGCCAGCGGACTGCTCTTTGTGTT
GACCGGCTATCTGCTGACGCCGGGATTACCGCTGCTGGGGGGCCTGATCCTGCTCTCCACGCTGCTGGTACTGGCGATCA
TCGACGGCCAGACTCAGCTCCTGCCGGATCGGCTGACTCTGCCGCTGCTGTGGGCCGGTCTGCTGTTTAATCTCAACGGC
ACGTTTGTCCCGCTCAGCGAAGCGGTGATCGGCGCCATGACGGGCTATTTATCACTGTGGACGGTTTACTGGCTGTTTCG
CCTGCTGACCGGCAAAGAGGCGCTAGGATACGGCGATTTTAAGCTGCTGGCGGCACTCGGCGCATGGTCCGGCTGGCAGA
TCCTGCCGCAGACGCTGCTGTGCGCCTCGGCCAGCGGCCTGATCTGGACCTTGCTGCAACGGCGGATCACGCTCCAGTCG
CTGGATCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCAGCGGCCTGTTTCTGTGGACTCAGACGCTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (122-230)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.529	100	0.498
pilD	Vibrio campbellii strain DS40M4	45.221	100	0.464
pilD	Neisseria gonorrhoeae MS11	46.614	94.717	0.442
pilD	Acinetobacter baumannii D1279779	44.574	97.358	0.434
pilD	Acinetobacter nosocomialis M2	44.186	97.358	0.43