Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DQN28_RS04235 Genome accession   NZ_LS483430
Coordinates   819286..819966 (+) Length   226 a.a.
NCBI ID   WP_032464359.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12044     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 814286..824966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN28_RS04215 (NCTC12044_00837) aphA 814712..815443 (+) 732 WP_002984720.1 acid phosphatase AphA -
  DQN28_RS04220 (NCTC12044_00838) - 815621..817153 (+) 1533 WP_002995354.1 ClC family H(+)/Cl(-) exchange transporter -
  DQN28_RS04225 (NCTC12044_00839) - 817316..817930 (+) 615 WP_011054476.1 SGNH/GDSL hydrolase family protein -
  DQN28_RS04230 (NCTC12044_00840) - 818110..819237 (+) 1128 WP_002994399.1 AI-2E family transporter -
  DQN28_RS04235 (NCTC12044_00841) radC 819286..819966 (+) 681 WP_032464359.1 RadC family protein Machinery gene
  DQN28_RS04240 (NCTC12044_00842) - 819968..820663 (-) 696 WP_002989835.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DQN28_RS04245 (NCTC12044_00843) - 820673..821317 (-) 645 WP_002984705.1 redox-sensing transcriptional repressor Rex -
  DQN28_RS04250 (NCTC12044_00844) - 821569..821916 (-) 348 WP_002989831.1 DUF1831 domain-containing protein -
  DQN28_RS04255 (NCTC12044_00845) - 821906..823033 (-) 1128 WP_002989829.1 cysteine desulfurase family protein -
  DQN28_RS04260 (NCTC12044_00846) - 823030..824010 (-) 981 WP_002989827.1 ribose-phosphate diphosphokinase -
  DQN28_RS04265 (NCTC12044_00847) - 824150..824728 (-) 579 WP_002989824.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25771.02 Da        Isoelectric Point: 7.3866

>NTDB_id=1024456 DQN28_RS04235 WP_032464359.1 819286..819966(+) (radC) [Streptococcus pyogenes strain NCTC12044]
MYSIKCDDNKVMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKA
IEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLDNQNRIIEEKTIFIGTVRRSLAEPREILY
YACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1024456 DQN28_RS04235 WP_032464359.1 819286..819966(+) (radC) [Streptococcus pyogenes strain NCTC12044]
ATGTATTCTATAAAATGTGATGATAATAAAGTCATGCCAAGAGAACGTTTGATGCGACTAGGAGCAGAGTCTCTAAGTAA
TCAAGAATTATTAGCAATTTTATTACGAACAGGTAATAAAGAAAAGCATGTCTTAGAGCTGTCATCCTATCTTTTATCGC
ATTTAGACAGTCTGGCAGATTTTAAAAAGATGTCTTTGCAAGAATTACAACATTTGGCAGGTATAGGAAAAGTTAAAGCG
ATTGAAATTAAAGCTATGATTGAGTTGGTTTCCCGAATTTTAGCGACCGATAAGACATTAACTGATAGCGTATTAACCAG
TGTTCAGGTCGCTGAAAAAATGATGGCAGCTTTAGGAGATAAAAAACAAGAGCATTTAGTCGTATTGTATTTAGATAATC
AAAATCGTATTATTGAAGAAAAAACTATTTTTATTGGGACTGTCCGACGTTCACTTGCAGAACCAAGAGAAATTTTATAC
TATGCCTGTAAAAATATGGCGACTAGTCTCATTGTTATTCATAATCATCCTTCAGGAAATATTGAACCTAGTTCTAACGA
TTATTGCTTTACTGAAAAAATAAAACGATCATGTGAAGATTTAGGCATTATCTGTCTAGATCACATTATCGTTAGCTATA
AAGATTATTATAGTTTTCGAGAAAAATCAACCCTTTTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(107-222)

UPF0758 N-terminal (UPF0758_N)

(12-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

57.965

100

0.58
  radC Streptococcus pneumoniae R6

57.522

100

0.575
  radC Streptococcus pneumoniae D39

57.522

100

0.575
  radC Streptococcus gordonii str. Challis substr. CH1

55.752

100

0.558
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.256

95.133

0.412
  radC Haemophilus influenzae Rd KW20

37.9

96.903

0.367