Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB3N42_RS22575 Genome accession   NZ_CP162154
Coordinates   4749826..4751346 (+) Length   506 a.a.
NCBI ID   WP_368267680.1    Uniprot ID   -
Organism   Enterobacter cloacae strain STK71-C     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4744826..4756346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N42_RS22550 (AB3N42_22550) ilvE 4746391..4747320 (-) 930 WP_013099287.1 branched-chain-amino-acid transaminase -
  AB3N42_RS22555 (AB3N42_22555) ilvM 4747339..4747602 (-) 264 WP_368267679.1 acetolactate synthase 2 small subunit -
  AB3N42_RS22560 (AB3N42_22560) ilvG 4747599..4749245 (-) 1647 WP_236276786.1 acetolactate synthase 2 catalytic subunit -
  AB3N42_RS22565 (AB3N42_22565) ilvX 4749248..4749298 (-) 51 WP_102046757.1 peptide IlvX -
  AB3N42_RS22570 (AB3N42_22570) ilvL 4749385..4749483 (-) 99 WP_023620831.1 ilv operon leader peptide -
  AB3N42_RS22575 (AB3N42_22575) comM 4749826..4751346 (+) 1521 WP_368267680.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB3N42_RS22580 (AB3N42_22580) - 4751379..4751717 (-) 339 WP_013099290.1 DUF413 domain-containing protein -
  AB3N42_RS22585 (AB3N42_22585) hdfR 4751836..4752657 (+) 822 WP_020685959.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54979.93 Da        Isoelectric Point: 6.9981

>NTDB_id=1024329 AB3N42_RS22575 WP_368267680.1 4749826..4751346(+) (comM) [Enterobacter cloacae strain STK71-C]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTARLGSYEFIGELALTGALRGVPGAISGALEAIHAGRQIILANENASEVSLIAEKGCLVAGHL
QEVCAHLEGRHILSEPEETGDILPESPDDLSDIIGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQTTIRG
ESTANVRERVIASQARQYARQHKLNARLDNAEIRQFCHLKAEDACWLEETLTRFGLSIRAWQRLLKVARTIADVEGDPEI
ERHHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1024329 AB3N42_RS22575 WP_368267680.1 4749826..4751346(+) (comM) [Enterobacter cloacae strain STK71-C]
ATGTCACTGTCAGTTGTTTACACGCGCGCGGCTATCGGAGTAAAGGCACCGCTTATTTCTGTGGAGGTTCATCTGAGTAA
TGGGCTCCCTGGGCTAACGCTTGTCGGCTTGCCAGAAACCACGGTCAAAGAAGCCAGAGATCGGGTTCGCAGCGCAATTA
TCAATAGCGGTTATACCTTCCCCGCCAAGAAGATCACGATCAACCTTGCTCCCGCAGATCTGCCCAAGGAGGGCGGACGA
TACGATTTACCTATCGCTATTGCGCTTCTCGCAGCCTCTGAGCAGCTCAACACAGCGAGGCTAGGCTCGTACGAGTTCAT
TGGCGAACTGGCGCTTACAGGCGCGTTAAGAGGCGTTCCTGGCGCCATCTCTGGTGCGCTGGAAGCCATTCATGCTGGTC
GACAAATTATTTTAGCCAATGAAAATGCCTCAGAAGTGAGCCTGATTGCCGAGAAAGGGTGCCTGGTCGCGGGGCATTTG
CAGGAAGTCTGCGCGCACCTTGAAGGCCGACATATCCTCTCTGAGCCAGAGGAAACCGGAGATATCCTGCCTGAAAGCCC
GGACGACCTCAGCGATATTATCGGGCAGGAGCAGGGGAAGCGGGCACTGGAGATCACCGCAGCCGGAGGACATAACCTGT
TGCTGATTGGCCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCAGGCTAAACGGGTTATTGCCACCACTCAATAATCAT
GAGGCACTTGAAAGCGCAGCGATATTTAGCCTGGTGAGCTCTGCATCATTGCAAAAACAGTGGCGACGACGCCCTTTTCG
CTCTCCCCATCACAGTGCCTCCCTGACGGCCATGGTCGGAGGGGGCTCCATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATCCTGTTCCTTGATGAACTGCCTGAGTTTGAACGCCGCGTACTGGATGCCCTGCGGGAACCTATCGAATCT
GGCGAGATCCATATCTCCCGCACGCGCGCCAAAATAAGCTACCCGGCACAGTTCCAGCTGGTTGCTGCCATGAACCCCAG
CCCATCAGGCCATTATCAGGGGAATCATAATCGCTGCACGCCTGAGCAGACGCTGCGCTATCTGGGGAAGCTGTCAGGCC
CTTTCCTCGATCGTTTTGATTTATCCCTGGAGATCCCCTTACCTCCCCCAGGTTTGCTCAGCCAGACAACGATACGCGGT
GAGAGCACAGCGAATGTTCGCGAACGGGTTATCGCCTCACAGGCCCGACAGTACGCTCGTCAACATAAGCTGAATGCGCG
TCTGGATAATGCTGAGATTCGGCAGTTTTGCCATCTTAAGGCTGAGGATGCCTGCTGGCTTGAAGAGACATTGACGCGAT
TTGGGCTCTCGATCCGTGCATGGCAGCGCCTGCTGAAAGTGGCTCGCACTATTGCCGATGTGGAAGGAGACCCAGAGATT
GAAAGACACCATCTGCAGGAAGCGCTGAGCTATCGCGCCATAGATCGGTTGTTGCTGCACCTGCAAAAATTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.789

100

0.595
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio campbellii strain DS40M4

59.325

99.605

0.591
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443

Multiple sequence alignment