Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB3N39_RS20250 Genome accession   NZ_CP162152
Coordinates   4303786..4305306 (+) Length   506 a.a.
NCBI ID   WP_325814645.1    Uniprot ID   -
Organism   Enterobacter vonholyi strain STK80-C     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4298786..4310306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N39_RS20225 (AB3N39_20225) ilvE 4300352..4301281 (-) 930 WP_127732610.1 branched-chain-amino-acid transaminase -
  AB3N39_RS20230 (AB3N39_20230) ilvM 4301300..4301563 (-) 264 WP_059354681.1 acetolactate synthase 2 small subunit -
  AB3N39_RS20235 (AB3N39_20235) ilvG 4301560..4303206 (-) 1647 WP_133295335.1 acetolactate synthase 2 catalytic subunit -
  AB3N39_RS20240 (AB3N39_20240) ilvX 4303209..4303259 (-) 51 WP_166792073.1 peptide IlvX -
  AB3N39_RS20245 (AB3N39_20245) ilvL 4303346..4303444 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AB3N39_RS20250 (AB3N39_20250) comM 4303786..4305306 (+) 1521 WP_325814645.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB3N39_RS20255 (AB3N39_20255) - 4305338..4305676 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  AB3N39_RS20260 (AB3N39_20260) hdfR 4305795..4306616 (+) 822 WP_143345660.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54999.97 Da        Isoelectric Point: 6.8203

>NTDB_id=1024307 AB3N39_RS20250 WP_325814645.1 4303786..4305306(+) (comM) [Enterobacter vonholyi strain STK80-C]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGLYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVMTDVPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1024307 AB3N39_RS20250 WP_325814645.1 4303786..4305306(+) (comM) [Enterobacter vonholyi strain STK80-C]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTGTTTCAGTTGAGGTTCATTTGAGTAA
TGGGCTACCCGGGCTCACGCTTGTCGGCTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCTGCGAAGAAGATCACCATCAACCTTGCTCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACAAGGCTAGGCTTGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCAGGAGCGCTGGAGGCCATACGTGCCGGGC
GGCAAATCATTGTCGCAAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAAGGATGCCTCATCGCGGGACATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGACGACATGAACTGTCCGAGCCGGAGGAGTGTGACGATGTTATGACCGACGTCCC
GGAGGATCTCAGCGAGATTATGGGGCAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCCGCAGGTGGGCACAATCTTC
TGTTGATTGGTCCACCAGGTACGGGGAAAACGATGCTGGCGAGCAGGTTGAGTGGATTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCTGCCATATATAGCCTCATCAGTTCTGCATCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACCGCAATGGTCGGCGGCGGGTCTATCCCCGGGCCGGGAGAGATCTCACTGGCCC
ATAATGGAATTCTATTTCTCGATGAGCTGCCCGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGAGAACCTATTGAATCT
GGCGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGCCACTACCAGGGCAACCATAACCGCTGTACGCCGGAGCAAACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTTGACCGTTTCGATTTATCCCTCGAGATCCCCCTTCCTCCGCCGGGTCTGCTCAGGCAGACGGGTATCACGGGT
GAAAGCTCAGCTGATGTACGCGAGCGGGTGATTGCGGCCCAGACGCGACAGTATGCTCGTCAGAACAGGCTAAATGCCCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCCCTTAACAGTGAGGATGCGGGATGGCTTGAGGAGACGTTGACGCGCT
TTGGGCTGTCTATACGTGCGTGGCAGCGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGGTGCACTGACATT
GAGAGAAAGCATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

50.503

98.221

0.496
  comM Legionella pneumophila strain ERS1305867

50.503

98.221

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439

Multiple sequence alignment