Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3N39_RS01545 Genome accession   NZ_CP162152
Coordinates   333235..333765 (+) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter vonholyi strain STK80-C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 328235..338765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N39_RS01525 (AB3N39_01525) aphA 328559..329272 (+) 714 WP_133293590.1 acid phosphatase AphA -
  AB3N39_RS01530 (AB3N39_01530) - 329386..329802 (+) 417 WP_111964202.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AB3N39_RS01535 (AB3N39_01535) - 329805..330158 (+) 354 WP_111964201.1 MmcQ/YjbR family DNA-binding protein -
  AB3N39_RS01540 (AB3N39_01540) uvrA 330162..332984 (-) 2823 WP_136196010.1 excinuclease ABC subunit UvrA -
  AB3N39_RS01545 (AB3N39_01545) ssb 333235..333765 (+) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB3N39_RS01550 (AB3N39_01550) - 333829..334110 (-) 282 WP_136196011.1 YjcB family protein -
  AB3N39_RS01555 (AB3N39_01555) - 334755..336320 (+) 1566 WP_133293592.1 EAL domain-containing protein -
  AB3N39_RS01560 (AB3N39_01560) soxS 336327..336653 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  AB3N39_RS01565 (AB3N39_01565) soxR 336752..337210 (+) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  AB3N39_RS01570 (AB3N39_01570) - 337499..338170 (+) 672 WP_367897015.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=1024290 AB3N39_RS01545 WP_023310055.1 333235..333765(+) (ssb) [Enterobacter vonholyi strain STK80-C]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1024290 AB3N39_RS01545 WP_023310055.1 333235..333765(+) (ssb) [Enterobacter vonholyi strain STK80-C]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGAGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACGACTGAAGTAGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCTGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364

Multiple sequence alignment