Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB2S62_RS01980 | Genome accession | NZ_CP162100 |
| Coordinates | 407101..407628 (+) | Length | 175 a.a. |
| NCBI ID | WP_367988059.1 | Uniprot ID | - |
| Organism | Vibrio sp. NTOU-M3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 402101..412628
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB2S62_RS01965 (AB2S62_01725) | galU | 404717..405589 (-) | 873 | WP_367988056.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AB2S62_RS01970 (AB2S62_01730) | qstR | 405708..406352 (-) | 645 | WP_367988057.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| AB2S62_RS01975 (AB2S62_01735) | - | 406595..406966 (+) | 372 | WP_367988058.1 | VanZ family protein | - |
| AB2S62_RS01980 (AB2S62_01740) | ssb | 407101..407628 (+) | 528 | WP_367988059.1 | single-stranded DNA-binding protein | Machinery gene |
| AB2S62_RS01985 (AB2S62_01745) | csrD | 407762..409771 (+) | 2010 | WP_367988060.1 | RNase E specificity factor CsrD | - |
| AB2S62_RS01990 (AB2S62_01750) | - | 409778..411217 (+) | 1440 | WP_367988061.1 | MSHA biogenesis protein MshI | - |
| AB2S62_RS01995 (AB2S62_01755) | pilO | 411214..411864 (+) | 651 | WP_367988062.1 | type 4a pilus biogenesis protein PilO | - |
| AB2S62_RS02000 (AB2S62_01760) | - | 411857..412180 (+) | 324 | WP_367988063.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19298.41 Da Isoelectric Point: 5.7683
>NTDB_id=1024030 AB2S62_RS01980 WP_367988059.1 407101..407628(+) (ssb) [Vibrio sp. NTOU-M3]
MASRGVNKVILVGNLGNDPEVRYMPSGGAVANITVATSESWRDKNTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQERYTTEVVVQGFNGVMQMLGGRAQGGAPAQGMGGQQQGGWGQPQQPAMQHQPAQQPQSQPKQAQP
QYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEVRYMPSGGAVANITVATSESWRDKNTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQERYTTEVVVQGFNGVMQMLGGRAQGGAPAQGMGGQQQGGWGQPQQPAMQHQPAQQPQSQPKQAQP
QYNEPPMDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=1024030 AB2S62_RS01980 WP_367988059.1 407101..407628(+) (ssb) [Vibrio sp. NTOU-M3]
ATGGCGAGCCGTGGAGTAAACAAAGTAATTTTAGTTGGTAACTTGGGTAATGATCCTGAAGTTCGTTACATGCCAAGTGG
CGGCGCTGTGGCAAACATTACTGTTGCAACCTCAGAAAGCTGGCGCGATAAGAACACAGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAATTAGCTGAAGTCGCAGGTGAATACTTACGCAAAGGTTCTCAGGTATACATT
GAAGGTCAACTTCAAACGCGTAAGTGGCAAGATCAAAACGGCCAAGAGCGTTACACGACAGAAGTTGTGGTACAAGGTTT
CAATGGTGTAATGCAAATGCTAGGAGGCCGTGCTCAAGGGGGCGCACCTGCACAAGGAATGGGTGGCCAGCAGCAAGGCG
GTTGGGGTCAACCTCAGCAGCCAGCAATGCAACATCAACCAGCTCAGCAACCACAATCGCAACCAAAACAGGCTCAGCCA
CAATATAATGAGCCACCGATGGATTTTGATGACGACATCCCGTTTTAA
ATGGCGAGCCGTGGAGTAAACAAAGTAATTTTAGTTGGTAACTTGGGTAATGATCCTGAAGTTCGTTACATGCCAAGTGG
CGGCGCTGTGGCAAACATTACTGTTGCAACCTCAGAAAGCTGGCGCGATAAGAACACAGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAATTAGCTGAAGTCGCAGGTGAATACTTACGCAAAGGTTCTCAGGTATACATT
GAAGGTCAACTTCAAACGCGTAAGTGGCAAGATCAAAACGGCCAAGAGCGTTACACGACAGAAGTTGTGGTACAAGGTTT
CAATGGTGTAATGCAAATGCTAGGAGGCCGTGCTCAAGGGGGCGCACCTGCACAAGGAATGGGTGGCCAGCAGCAAGGCG
GTTGGGGTCAACCTCAGCAGCCAGCAATGCAACATCAACCAGCTCAGCAACCACAATCGCAACCAAAACAGGCTCAGCCA
CAATATAATGAGCCACCGATGGATTTTGATGACGACATCCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
83.24 |
100 |
0.851 |
| ssb | Glaesserella parasuis strain SC1401 |
55.67 |
100 |
0.617 |
| ssb | Neisseria meningitidis MC58 |
48.603 |
100 |
0.497 |
| ssb | Neisseria gonorrhoeae MS11 |
48.603 |
100 |
0.497 |