Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AB2S62_RS01970 Genome accession   NZ_CP162100
Coordinates   405708..406352 (-) Length   214 a.a.
NCBI ID   WP_367988057.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 400708..411352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS01960 (AB2S62_01720) uvrA 401757..404579 (-) 2823 WP_367988055.1 excinuclease ABC subunit UvrA -
  AB2S62_RS01965 (AB2S62_01725) galU 404717..405589 (-) 873 WP_367988056.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AB2S62_RS01970 (AB2S62_01730) qstR 405708..406352 (-) 645 WP_367988057.1 LuxR C-terminal-related transcriptional regulator Regulator
  AB2S62_RS01975 (AB2S62_01735) - 406595..406966 (+) 372 WP_367988058.1 VanZ family protein -
  AB2S62_RS01980 (AB2S62_01740) ssb 407101..407628 (+) 528 WP_367988059.1 single-stranded DNA-binding protein Machinery gene
  AB2S62_RS01985 (AB2S62_01745) csrD 407762..409771 (+) 2010 WP_367988060.1 RNase E specificity factor CsrD -
  AB2S62_RS01990 (AB2S62_01750) - 409778..411217 (+) 1440 WP_367988061.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24555.39 Da        Isoelectric Point: 8.2874

>NTDB_id=1024029 AB2S62_RS01970 WP_367988057.1 405708..406352(-) (qstR) [Vibrio sp. NTOU-M3]
MNRSSYTRTIHHLCLQKEQEPFVTDIEDKLGLTIPMIKPEELMLADRQHRHKILLINYSDHHAINSQLSALPLVNKLFEV
IVFNVNKRLTTDELLAMGNLKGLFYNTDSMEAIAHGCAEIINGQNWLPRKVASQLLHYYRQAVDCQTAPATVDLTNREIQ
LLGYLKTGASNIQIAEEMFISEFTVKSHLYQIYKKLSVKNRLQAAAWARQHILS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1024029 AB2S62_RS01970 WP_367988057.1 405708..406352(-) (qstR) [Vibrio sp. NTOU-M3]
GTGAATAGAAGCAGCTATACCCGAACCATACACCACTTATGCTTGCAAAAAGAACAAGAACCATTTGTCACCGATATTGA
AGACAAACTCGGCTTAACTATCCCTATGATAAAACCTGAAGAGCTGATGTTGGCCGATCGACAACATCGGCATAAAATTT
TATTAATCAATTATTCTGACCATCATGCAATTAACTCTCAATTAAGCGCTCTTCCGTTAGTCAACAAACTGTTTGAGGTC
ATTGTGTTTAATGTTAATAAACGACTGACAACGGATGAACTCCTAGCGATGGGAAATCTGAAGGGTTTGTTTTATAACAC
CGATAGCATGGAAGCCATCGCACATGGGTGCGCCGAAATCATTAACGGCCAAAACTGGTTGCCTAGAAAAGTGGCTTCTC
AATTGTTGCACTACTATCGTCAAGCCGTCGACTGTCAAACTGCCCCAGCGACAGTTGACTTGACCAATAGAGAAATACAA
CTGCTTGGTTATCTCAAAACTGGCGCTTCGAATATTCAGATCGCGGAAGAGATGTTTATTAGCGAGTTTACCGTCAAATC
TCACCTCTATCAGATCTATAAAAAACTCTCCGTGAAAAACCGATTGCAAGCAGCGGCATGGGCAAGACAACACATATTGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

56.075

100

0.561
  qstR Vibrio campbellii strain DS40M4

56.075

100

0.561
  qstR Vibrio cholerae strain A1552

55.607

100

0.556

Multiple sequence alignment