Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB2S62_RS00110 Genome accession   NZ_CP162100
Coordinates   23910..25433 (+) Length   507 a.a.
NCBI ID   WP_367987725.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 18910..30433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS00090 (AB2S62_14795) ilvE 19472..20419 (-) 948 WP_367987721.1 branched-chain-amino-acid transaminase -
  AB2S62_RS00095 (AB2S62_14800) ilvM 20432..20716 (-) 285 WP_367987722.1 acetolactate synthase 2 small subunit -
  AB2S62_RS00100 (AB2S62_14805) ilvG 20718..22364 (-) 1647 WP_367987723.1 acetolactate synthase 2 catalytic subunit -
  AB2S62_RS00105 (AB2S62_14810) - 23074..23469 (-) 396 WP_367987724.1 hypothetical protein -
  AB2S62_RS00110 (AB2S62_14815) comM 23910..25433 (+) 1524 WP_367987725.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB2S62_RS00115 (AB2S62_14820) - 25611..26492 (+) 882 WP_367987726.1 acyltransferase -
  AB2S62_RS00120 (AB2S62_14825) - 26524..27126 (-) 603 WP_367987727.1 thiol:disulfide interchange protein DsbA/DsbL -
  AB2S62_RS00125 (AB2S62_14830) - 27181..28167 (-) 987 WP_367987728.1 serine/threonine protein kinase -
  AB2S62_RS00130 (AB2S62_14835) - 28415..29170 (+) 756 WP_367987729.1 substrate-binding periplasmic protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54898.02 Da        Isoelectric Point: 7.8595

>NTDB_id=1024019 AB2S62_RS00110 WP_367987725.1 23910..25433(+) (comM) [Vibrio sp. NTOU-M3]
MGLAIVHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPTTNLQGKEFIGELALSGELRPVKGVLPAALAAIRTQRSLVVPHNNADQAALVGKECHKSAQTL
LEVCSDLCGQQALGLHIQPSTKATPPSGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQQEIHANNWKQRPFRSPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLIGALNPSPTGYHEGAQARTNPQTILRYLSRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GETTQVVKERVLIAREQMLARAGKVNALLGSREIEHYCHLEKTDAQFLETALHRLGLSIRAYHRIIKVARTIADLAGSEA
IRREHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1024019 AB2S62_RS00110 WP_367987725.1 23910..25433(+) (comM) [Vibrio sp. NTOU-M3]
ATGGGATTAGCAATTGTGCATAGTCGTGCCAGTGTAGGTGTTGAGGCTCCAGAGGTGACGGTTGAAGTACATATTAGTAA
CGGCATGCCGGGGTTCACTTTGGTGGGGCTCCCGGAAACCACGGTGAAAGAGTCTCGCGATCGCGTGCGTAGTGCCATTA
TCAATTCCCGTTTTGAGTTTCCTGCTAAGCGGATCACGGTGAATTTAGCGCCTGCGGATTTACCAAAGGAAGGAGGGCGT
TTTGATTTGCCGATTGCGCTGGGTATTTTGGCAGCATCTGAGCAAATACCAACAACGAACTTACAAGGTAAAGAGTTTAT
TGGTGAGTTAGCTCTCTCTGGTGAACTGCGTCCCGTCAAGGGAGTATTGCCTGCAGCATTAGCGGCGATTCGAACTCAAC
GTAGTTTAGTGGTCCCCCATAATAATGCCGATCAGGCTGCATTAGTGGGGAAAGAATGCCACAAATCTGCACAAACATTG
CTGGAGGTATGCAGTGATTTATGTGGTCAGCAGGCATTAGGCTTACACATTCAGCCCAGTACAAAGGCCACTCCGCCATC
GGGGCGAGATTTGCAAGACATCATTGGTCAGCAGCAAGGTAAACGTGCGCTAGAGATCGCAGCTGCGGGCAATCACAATC
TGCTTTTTCTCGGTCCTCCCGGCACGGGTAAAACCATGCTAGCCTCAAGGTTGTGCGACTTACTGCCTGAAATGAGTGAT
GATGAAGCGATGGAGACGGCGTCTGTTGCTTCGCTCACCCAACAAGAGATCCATGCGAACAACTGGAAACAACGACCGTT
TCGATCGCCGCATCATTCGAGCTCGATGGCGGCACTGGTGGGCGGTGGCACAATTCCTAGACCCGGTGAGATCTCTTTGG
CGCACAATGGCTTGCTGTTTCTTGATGAAATGCCTGAGTTTGAGCGTAAAGTGCTTGATTCGTTGCGAGAGCCGCTGGAG
TCCGGCGAGATAATTATCTCTCGGGCACAAGGAAAAACTCGTTTTCCTGCTCGCTTTCAGTTGATTGGCGCCTTAAACCC
CAGCCCGACGGGATACCATGAAGGCGCTCAAGCTCGGACAAATCCACAAACGATTTTGCGCTACTTAAGCCGTTTGTCTG
GCCCGTTACTTGATCGGTTTGATATGTCTTTAGAAATCCCAGCATTACCGAAAGGTACTTTGGCAGAAGGGGGCGATCGC
GGAGAAACTACACAAGTGGTGAAAGAGCGAGTGTTGATTGCGCGAGAGCAGATGTTAGCACGTGCTGGTAAAGTTAATGC
GTTACTGGGAAGTCGCGAAATTGAGCACTATTGTCATCTAGAAAAAACCGATGCGCAGTTTTTAGAAACTGCTTTACATC
GCTTAGGGCTTTCCATCCGTGCGTATCATCGGATCATCAAAGTGGCTCGAACGATTGCCGATTTAGCCGGCAGCGAAGCC
ATTCGTCGAGAGCACTTAGCGGAAGCGCTTGGTTATCGTGCGATGGATCGCTTATTGAAACAGCTTACCGCACAAGCGGT
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

84.813

100

0.848
  comM Vibrio cholerae strain A1552

84.418

100

0.844
  comM Haemophilus influenzae Rd KW20

66.469

100

0.665
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

50.198

99.408

0.499
  comM Legionella pneumophila strain ERS1305867

50.198

99.408

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.998

100

0.43

Multiple sequence alignment