Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQN40_RS11670 Genome accession   NZ_LS483413
Coordinates   854048..854713 (+) Length   221 a.a.
NCBI ID   WP_012767419.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 849048..859713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN40_RS04460 (NCTC7136_00918) - 849106..850506 (+) 1401 WP_042357970.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQN40_RS04465 (NCTC7136_00919) - 850506..850865 (+) 360 WP_003056775.1 S1 RNA-binding domain-containing protein -
  DQN40_RS04470 (NCTC7136_00920) cysK 851018..851953 (-) 936 WP_084916480.1 cysteine synthase A -
  DQN40_RS04475 (NCTC7136_00921) - 852057..852695 (-) 639 WP_084916482.1 YigZ family protein -
  DQN40_RS04480 (NCTC7136_00922) comFA/cflA 852751..854076 (+) 1326 WP_015017291.1 DEAD/DEAH box helicase Machinery gene
  DQN40_RS11670 (NCTC7136_00923) comFC/cflB 854048..854713 (+) 666 WP_012767419.1 ComF family protein Machinery gene
  DQN40_RS04490 (NCTC7136_00924) raiA 854793..855341 (+) 549 WP_084916484.1 ribosome-associated translation inhibitor RaiA -
  DQN40_RS04495 (NCTC7136_00925) - 855471..856439 (+) 969 WP_111679497.1 IS30 family transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25364.39 Da        Isoelectric Point: 8.7003

>NTDB_id=1023673 DQN40_RS11670 WP_012767419.1 854048..854713(+) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKISFTSCQTCNAPSQSSPCSDCLEWKVKGYEVNHKSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTLSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1023673 DQN40_RS11670 WP_012767419.1 854048..854713(+) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCACAAAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCCTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403