Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   AB2J53_RS07140 Genome accession   NZ_CP162020
Coordinates   1354431..1355387 (+) Length   318 a.a.
NCBI ID   WP_197214642.1    Uniprot ID   -
Organism   Cytobacillus firmus strain A4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349431..1360387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2J53_RS07120 (AB2J53_07120) clpB 1349641..1352238 (+) 2598 WP_368298338.1 ATP-dependent chaperone ClpB -
  AB2J53_RS07125 (AB2J53_07125) - 1352308..1352499 (-) 192 WP_048010975.1 DUF2929 family protein -
  AB2J53_RS07130 (AB2J53_07130) - 1352678..1353415 (+) 738 WP_197214640.1 alpha/beta hydrolase -
  AB2J53_RS07135 (AB2J53_07135) - 1353494..1354321 (+) 828 WP_368298339.1 hypothetical protein -
  AB2J53_RS07140 (AB2J53_07140) med 1354431..1355387 (+) 957 WP_197214642.1 BMP family ABC transporter substrate-binding protein Regulator
  AB2J53_RS07145 (AB2J53_07145) comZ 1355417..1355605 (+) 189 WP_048010971.1 ComZ family protein Regulator
  AB2J53_RS07150 (AB2J53_07150) - 1355663..1356049 (-) 387 WP_197214643.1 hypothetical protein -
  AB2J53_RS07155 (AB2J53_07155) - 1356264..1357196 (+) 933 WP_197214644.1 beta-ketoacyl-ACP synthase III -
  AB2J53_RS07160 (AB2J53_07160) fabF 1357494..1358732 (+) 1239 WP_368298340.1 beta-ketoacyl-ACP synthase II -
  AB2J53_RS07165 (AB2J53_07165) - 1358971..1359636 (+) 666 WP_197214645.1 DUF2268 domain-containing putative Zn-dependent protease -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35600.17 Da        Isoelectric Point: 4.4144

>NTDB_id=1023611 AB2J53_RS07140 WP_197214642.1 1354431..1355387(+) (med) [Cytobacillus firmus strain A4]
MHKTLKKLGILLLCLLLLASCRQPMSAGKLEKAGLLVPDTVNDQVWGTKGYKGMLKIQSHYDIEVYYKEGMNSEMVVERA
VKEFDQKGVNLIFGHGNEYAAYFNNISKKYPDIHFVSFNGDAQNENTTSLNFEAYAMGFFGGMVAGHMTKTNNVGILAAF
EWQPEVEGFYEGANYINDNVNVQIQYVGNWDNDNKAIALLDKLIANKTDVVYPAGDGYNVPVIEKLKEEGLYAIGYISDQ
SDLGESVVLTSTIQHVDVLYELVAEKYNEGELESGNLSFDFEDEVISLGRFSPDVDEEFKKELNAVIENYKKTGKLPE

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1023611 AB2J53_RS07140 WP_197214642.1 1354431..1355387(+) (med) [Cytobacillus firmus strain A4]
ATGCATAAGACATTAAAGAAATTAGGGATCCTTCTTTTGTGCCTTCTTTTATTGGCCTCCTGCAGACAGCCGATGTCTGC
AGGAAAACTTGAGAAAGCTGGATTATTAGTGCCCGATACTGTCAATGACCAAGTATGGGGGACCAAAGGCTATAAAGGCA
TGCTAAAGATTCAATCCCATTATGATATTGAGGTTTATTATAAAGAAGGAATGAATTCAGAGATGGTTGTTGAAAGAGCA
GTTAAAGAGTTTGACCAAAAAGGTGTAAACCTGATCTTTGGACATGGCAATGAATACGCTGCATACTTTAATAACATCTC
AAAAAAATATCCTGACATTCACTTTGTCAGCTTTAATGGTGACGCCCAAAATGAAAACACCACCAGTTTGAACTTTGAAG
CATATGCCATGGGTTTCTTCGGAGGCATGGTTGCAGGACATATGACGAAAACGAATAATGTAGGAATACTGGCGGCTTTT
GAATGGCAGCCGGAAGTAGAAGGTTTTTATGAAGGTGCAAACTATATCAATGATAATGTAAACGTGCAGATCCAATATGT
CGGCAACTGGGACAATGATAACAAAGCCATCGCTCTTTTGGACAAACTTATTGCCAATAAGACAGATGTTGTATATCCGG
CCGGAGATGGGTATAATGTTCCTGTTATCGAAAAGCTGAAAGAAGAAGGGCTCTACGCCATCGGCTATATTTCCGATCAG
TCTGATTTGGGTGAATCAGTCGTCCTGACCAGTACAATTCAGCATGTAGATGTTTTATATGAACTGGTGGCAGAAAAATA
TAACGAAGGCGAGCTTGAATCAGGAAATCTATCCTTCGATTTTGAGGATGAAGTGATTTCACTTGGAAGATTCAGCCCTG
ACGTCGACGAAGAATTCAAAAAAGAACTAAACGCTGTCATTGAGAATTACAAAAAAACAGGCAAATTGCCTGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.229

98.742

0.516

Multiple sequence alignment