Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | AB3F25_RS07540 | Genome accession | NZ_CP162010 |
| Coordinates | 1616480..1616821 (+) | Length | 113 a.a. |
| NCBI ID | WP_373603234.1 | Uniprot ID | - |
| Organism | Aggregatibacter sp. HMT-949 strain W10649 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1611480..1621821
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3F25_RS07520 (AB3F25_07515) | rluC | 1612785..1613753 (+) | 969 | WP_373603230.1 | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | - |
| AB3F25_RS07525 (AB3F25_07520) | hfq | 1613841..1614119 (+) | 279 | WP_373603231.1 | RNA chaperone Hfq | - |
| AB3F25_RS07530 (AB3F25_07525) | hflX | 1614129..1615493 (+) | 1365 | WP_373603232.1 | ribosome rescue GTPase HflX | - |
| AB3F25_RS07535 (AB3F25_07530) | - | 1615519..1616301 (-) | 783 | WP_373603233.1 | helical backbone metal receptor | - |
| AB3F25_RS07540 (AB3F25_07535) | comE1/comEA | 1616480..1616821 (+) | 342 | WP_373603234.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| AB3F25_RS07545 (AB3F25_07540) | - | 1616922..1617689 (-) | 768 | WP_373603235.1 | energy transducer TonB | - |
| AB3F25_RS07550 (AB3F25_07545) | exbD | 1617698..1618117 (-) | 420 | WP_373603236.1 | TonB system transport protein ExbD | - |
| AB3F25_RS07555 (AB3F25_07550) | exbB | 1618120..1618572 (-) | 453 | WP_373603237.1 | TonB-system energizer ExbB | - |
| AB3F25_RS07560 (AB3F25_07555) | bcp | 1618731..1619201 (-) | 471 | WP_373603238.1 | thioredoxin-dependent thiol peroxidase | - |
| AB3F25_RS07565 (AB3F25_07560) | dapA | 1619313..1620209 (+) | 897 | WP_373603239.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| AB3F25_RS07570 (AB3F25_07565) | bamC | 1620300..1621304 (+) | 1005 | WP_373603240.1 | outer membrane protein assembly factor BamC | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12073.82 Da Isoelectric Point: 9.5670
>NTDB_id=1023494 AB3F25_RS07540 WP_373603234.1 1616480..1616821(+) (comE1/comEA) [Aggregatibacter sp. HMT-949 strain W10649]
MKLVKTFISAYVLGSALFNGSVFAAEKAAEPVAMVQTANAETQQTADMGNKLNINTATAGEIQKALTGIGAKKAEAIVQY
REKHGNFTTAEQLLEVQGIGKATLEKNRDRLAF
MKLVKTFISAYVLGSALFNGSVFAAEKAAEPVAMVQTANAETQQTADMGNKLNINTATAGEIQKALTGIGAKKAEAIVQY
REKHGNFTTAEQLLEVQGIGKATLEKNRDRLAF
Nucleotide
Download Length: 342 bp
>NTDB_id=1023494 AB3F25_RS07540 WP_373603234.1 1616480..1616821(+) (comE1/comEA) [Aggregatibacter sp. HMT-949 strain W10649]
ATGAAATTAGTCAAAACCTTTATCAGTGCTTACGTACTTGGCAGTGCATTATTTAACGGCAGTGTTTTTGCGGCAGAAAA
AGCGGCGGAACCCGTTGCTATGGTACAAACCGCAAACGCTGAAACCCAACAAACCGCCGATATGGGCAATAAACTCAATA
TTAATACCGCAACGGCAGGTGAAATCCAAAAAGCATTAACCGGTATCGGGGCGAAAAAAGCGGAAGCTATCGTACAATAC
CGTGAGAAACATGGTAATTTCACCACAGCAGAACAATTACTTGAAGTGCAAGGCATCGGTAAAGCGACGCTTGAAAAAAA
TCGCGATCGCTTGGCCTTTTAA
ATGAAATTAGTCAAAACCTTTATCAGTGCTTACGTACTTGGCAGTGCATTATTTAACGGCAGTGTTTTTGCGGCAGAAAA
AGCGGCGGAACCCGTTGCTATGGTACAAACCGCAAACGCTGAAACCCAACAAACCGCCGATATGGGCAATAAACTCAATA
TTAATACCGCAACGGCAGGTGAAATCCAAAAAGCATTAACCGGTATCGGGGCGAAAAAAGCGGAAGCTATCGTACAATAC
CGTGAGAAACATGGTAATTTCACCACAGCAGAACAATTACTTGAAGTGCAAGGCATCGGTAAAGCGACGCTTGAAAAAAA
TCGCGATCGCTTGGCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
67.857 |
99.115 |
0.673 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.509 |
100 |
0.54 |
| comEA | Vibrio cholerae C6706 |
38.889 |
95.575 |
0.372 |
| comEA | Vibrio cholerae strain A1552 |
38.889 |
95.575 |
0.372 |