Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB3F25_RS00315 Genome accession   NZ_CP162010
Coordinates   64901..66430 (-) Length   509 a.a.
NCBI ID   WP_373603556.1    Uniprot ID   -
Organism   Aggregatibacter sp. HMT-949 strain W10649     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 59901..71430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3F25_RS00300 (AB3F25_00300) proS 60350..62065 (-) 1716 WP_373603553.1 proline--tRNA ligase -
  AB3F25_RS00305 (AB3F25_00305) - 62161..63210 (-) 1050 WP_373603554.1 extracellular solute-binding protein -
  AB3F25_RS00310 (AB3F25_00310) - 63513..64808 (+) 1296 WP_373603555.1 NAD(P)/FAD-dependent oxidoreductase -
  AB3F25_RS00315 (AB3F25_00315) comM 64901..66430 (-) 1530 WP_373603556.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB3F25_RS00320 (AB3F25_00320) yihA 66543..67157 (-) 615 WP_373603557.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  AB3F25_RS00325 (AB3F25_00325) tal 67433..68386 (+) 954 WP_373603558.1 transaldolase -
  AB3F25_RS00330 (AB3F25_00330) - 68574..68705 (+) 132 WP_373603559.1 hypothetical protein -
  AB3F25_RS00335 (AB3F25_00335) hisG 69021..69920 (+) 900 WP_373603560.1 ATP phosphoribosyltransferase -
  AB3F25_RS00340 (AB3F25_00340) hisD 69996..71282 (+) 1287 WP_373603561.1 histidinol dehydrogenase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55875.38 Da        Isoelectric Point: 9.6701

>NTDB_id=1023476 AB3F25_RS00315 WP_373603556.1 64901..66430(-) (comM) [Aggregatibacter sp. HMT-949 strain W10649]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQLDISRLKQFEFVGELALTGHLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSEQNTYFAQTL
LDVVQFLNNQMRLPLASDLTQEDVIDFPGKNPLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMSDQEAIETASVTSLVQNELNFQNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
SGDRGETSEQVREKVLKVREIQLARAGKINAYLTGKEIDRDCKLNEKDALFLEKALNKLGLSVRAYHRILKVSRTIADLN
GETQIGQPHLAEALGYRAMDRLLQKLANM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1023476 AB3F25_RS00315 WP_373603556.1 64901..66430(-) (comM) [Aggregatibacter sp. HMT-949 strain W10649]
ATGTCCCTCGCTATTGTTTACAGCCGCGCCTCCATGGGCGTACAAGCACCGCTCGTCACCATAGAAGTTCACTTGAGTAA
CGGCAAACCGGGTTTTACGCTTGTCGGATTGCCGGAAAAAACGGTAAAAGAAGCGCAAGATCGGGTACGCAGCGCGTTAA
TGAACGCACAATTCAAATATCCGGCCAAACGCATTACCGTTAATCTGGCACCGGCGGATTTGCCAAAAGAAGGCGGACGA
TTCGATTTGCCCATTGCACTAGGCATTCTTGCTGCCTCGGAACAGCTTGATATAAGCCGTTTGAAGCAATTTGAATTTGT
CGGCGAACTGGCATTGACGGGCCATTTACGCGGCGTGCATGGTGTCATTCCGGCCATTCTGGCGGCACAAAAATCAAAAC
GCGAACTGATCATCGCCAAGCAGAACGCGAATGAGGCTTCGTTAGTCTCCGAACAAAATACTTATTTTGCACAAACCTTG
TTAGATGTGGTGCAGTTTCTCAATAATCAGATGAGATTGCCTCTCGCCTCCGATTTAACGCAAGAAGATGTGATTGATTT
TCCCGGCAAGAATCCGCTTGATTTAACCGATATTATCGGGCAGCAACACGCTAAACGGGCGCTAACCATTGCCGCCGCAG
GACAGCATAATCTGTTATTTCTAGGCCCACCAGGTACCGGCAAAACCATGTTGGCAAGCCGATTGACCGGGCTTTTACCG
GAAATGAGCGATCAAGAAGCGATAGAAACCGCCTCCGTCACCAGCTTGGTGCAAAACGAATTGAATTTTCAGAACTGGAA
ACAACGTCCCTTTAGAGCACCGCATCACAGTGCCTCTATGCCGGCGCTAGTGGGCGGCGGAACCATTCCGAAACCCGGCG
AAATTTCTCTCGCCACCAACGGCGTACTTTTTCTTGATGAATTGCCGGAATTTGAACGCAAAGTCTTGGATGCGCTGCGC
CAACCGTTAGAAAGCGGTGAAATCATCATTTCACGTGCCAATGCGAAAATTCAATTTCCTGCGCGTTTTCAATTAGTCGC
GGCAATGAATCCGAGTCCGACCGGACATTACACCGGCACGCACAACCGCACTTCGCCACAACAAGTCATGCGTTATTTGA
ATCGTTTATCGGGGCCGTTTTTAGATCGCTTCGATCTCTCCATCGAAGTGCCGTTATTGCCGCAAGGCAGTTTACAAAAT
TCCGGTGATCGCGGCGAAACCAGCGAGCAAGTGCGAGAAAAAGTATTAAAAGTACGCGAAATTCAACTGGCAAGGGCGGG
AAAAATCAATGCTTATTTAACCGGCAAAGAAATTGATCGTGATTGTAAATTAAATGAAAAAGATGCGTTATTTTTGGAAA
AGGCACTCAACAAGCTTGGCCTTTCCGTGCGCGCTTATCATCGTATTTTGAAAGTTTCGCGCACAATTGCCGATCTCAAC
GGCGAAACCCAAATCGGCCAACCGCACTTGGCGGAGGCGCTGGGATATCGCGCAATGGATCGATTACTACAGAAGCTGGC
GAATATGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

92.338

100

0.923
  comM Glaesserella parasuis strain SC1401

79.804

100

0.8
  comM Vibrio cholerae strain A1552

66.535

99.804

0.664
  comM Vibrio campbellii strain DS40M4

65.81

99.411

0.654
  comM Legionella pneumophila str. Paris

51.69

98.821

0.511
  comM Legionella pneumophila strain ERS1305867

51.69

98.821

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.07

100

0.473

Multiple sequence alignment