Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   AB2M34_RS09205 Genome accession   NZ_CP161903
Coordinates   1730704..1731135 (+) Length   143 a.a.
NCBI ID   WP_080529538.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1725704..1736135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS09180 (AB2M34_09180) corA 1726946..1727899 (+) 954 WP_129134320.1 magnesium transporter CorA -
  AB2M34_RS09185 (AB2M34_09185) - 1727901..1728098 (+) 198 WP_129134319.1 hypothetical protein -
  AB2M34_RS09190 (AB2M34_09190) comGA 1728310..1729380 (+) 1071 WP_129134318.1 competence protein ComGA Machinery gene
  AB2M34_RS09195 (AB2M34_09195) comGB 1729367..1730404 (+) 1038 WP_044052501.1 comG operon protein ComGB Machinery gene
  AB2M34_RS09200 (AB2M34_09200) comGC 1730418..1730714 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  AB2M34_RS09205 (AB2M34_09205) comGD 1730704..1731135 (+) 432 WP_080529538.1 comG operon protein ComGD Machinery gene
  AB2M34_RS09210 (AB2M34_09210) comGE 1731119..1731466 (+) 348 WP_087614620.1 ComG operon protein 5 Machinery gene
  AB2M34_RS09215 (AB2M34_09215) comGF 1731492..1731875 (+) 384 WP_076458111.1 ComG operon protein ComGF Machinery gene
  AB2M34_RS09220 (AB2M34_09220) comGG 1731876..1732250 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  AB2M34_RS09225 (AB2M34_09225) spoIITA 1732322..1732501 (+) 180 WP_029726723.1 YqzE family protein -
  AB2M34_RS09230 (AB2M34_09230) yqzG 1732543..1732869 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  AB2M34_RS09235 (AB2M34_09235) tapA 1733141..1733902 (+) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  AB2M34_RS09240 (AB2M34_09240) sipW 1733886..1734458 (+) 573 WP_129134142.1 signal peptidase I SipW -
  AB2M34_RS09245 (AB2M34_09245) tasA 1734523..1735308 (+) 786 WP_014480250.1 biofilm matrix protein TasA -
  AB2M34_RS09250 (AB2M34_09250) sinR 1735401..1735736 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  AB2M34_RS09255 (AB2M34_09255) sinI 1735770..1735943 (-) 174 WP_003230187.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16079.61 Da        Isoelectric Point: 9.3263

>NTDB_id=1023067 AB2M34_RS09205 WP_080529538.1 1730704..1731135(+) (comGD) [Bacillus subtilis strain DYJ24]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVIGHDAYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1023067 AB2M34_RS09205 WP_080529538.1 1730704..1731135(+) (comGD) [Bacillus subtilis strain DYJ24]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAATAGGCCATGACGCTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

96.503

100

0.965

Multiple sequence alignment