Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AB2M34_RS09250 | Genome accession | NZ_CP161903 |
| Coordinates | 1735401..1735736 (-) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain DYJ24 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1730401..1740736
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB2M34_RS09200 (AB2M34_09200) | comGC | 1730418..1730714 (+) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
| AB2M34_RS09205 (AB2M34_09205) | comGD | 1730704..1731135 (+) | 432 | WP_080529538.1 | comG operon protein ComGD | Machinery gene |
| AB2M34_RS09210 (AB2M34_09210) | comGE | 1731119..1731466 (+) | 348 | WP_087614620.1 | ComG operon protein 5 | Machinery gene |
| AB2M34_RS09215 (AB2M34_09215) | comGF | 1731492..1731875 (+) | 384 | WP_076458111.1 | ComG operon protein ComGF | Machinery gene |
| AB2M34_RS09220 (AB2M34_09220) | comGG | 1731876..1732250 (+) | 375 | WP_014480253.1 | ComG operon protein ComGG | Machinery gene |
| AB2M34_RS09225 (AB2M34_09225) | spoIITA | 1732322..1732501 (+) | 180 | WP_029726723.1 | YqzE family protein | - |
| AB2M34_RS09230 (AB2M34_09230) | yqzG | 1732543..1732869 (-) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| AB2M34_RS09235 (AB2M34_09235) | tapA | 1733141..1733902 (+) | 762 | WP_014480251.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AB2M34_RS09240 (AB2M34_09240) | sipW | 1733886..1734458 (+) | 573 | WP_129134142.1 | signal peptidase I SipW | - |
| AB2M34_RS09245 (AB2M34_09245) | tasA | 1734523..1735308 (+) | 786 | WP_014480250.1 | biofilm matrix protein TasA | - |
| AB2M34_RS09250 (AB2M34_09250) | sinR | 1735401..1735736 (-) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| AB2M34_RS09255 (AB2M34_09255) | sinI | 1735770..1735943 (-) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| AB2M34_RS09260 (AB2M34_09260) | yqhG | 1736126..1736920 (-) | 795 | WP_014480249.1 | YqhG family protein | - |
| AB2M34_RS09265 (AB2M34_09265) | hepAA | 1736941..1738614 (-) | 1674 | WP_014480248.1 | DEAD/DEAH box helicase | - |
| AB2M34_RS09270 (AB2M34_09270) | gcvT | 1739056..1740144 (+) | 1089 | WP_129134000.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=1023071 AB2M34_RS09250 WP_003226345.1 1735401..1735736(-) (sinR) [Bacillus subtilis strain DYJ24]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1023071 AB2M34_RS09250 WP_003226345.1 1735401..1735736(-) (sinR) [Bacillus subtilis strain DYJ24]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |