Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ABU640_RS04825 | Genome accession | NZ_CP161854 |
| Coordinates | 1035036..1035347 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain C3616 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1030036..1040347
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABU640_RS04810 (ABU640_04810) | lon | 1030073..1032433 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| ABU640_RS04815 (ABU640_04815) | - | 1032617..1032889 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| ABU640_RS04820 (ABU640_04820) | ppiD | 1033042..1034901 (+) | 1860 | WP_032470896.1 | peptidylprolyl isomerase | - |
| ABU640_RS04825 (ABU640_04825) | comEA | 1035036..1035347 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| ABU640_RS04830 (ABU640_04830) | cmk | 1035530..1036207 (+) | 678 | WP_000094751.1 | (d)CMP kinase | - |
| ABU640_RS04835 (ABU640_04835) | rpsA | 1036316..1037986 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| ABU640_RS04840 (ABU640_04840) | ihfB | 1038328..1038606 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| ABU640_RS04845 (ABU640_04845) | - | 1038745..1039026 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| ABU640_RS04850 (ABU640_04850) | lapB | 1039038..1040207 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=1022764 ABU640_RS04825 WP_001166105.1 1035036..1035347(+) (comEA) [Vibrio cholerae strain C3616]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=1022764 ABU640_RS04825 WP_001166105.1 1035036..1035347(+) (comEA) [Vibrio cholerae strain C3616]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTTTGCCTACCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAAAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTTTGCCTACCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAAAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |