Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DMB79_RS15975 Genome accession   NZ_CP161828
Coordinates   3508823..3509380 (+) Length   185 a.a.
NCBI ID   WP_116155441.1    Uniprot ID   A0AA93ANG8
Organism   Pectobacterium aquaticum strain A101-S19-F16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3504212..3515380 3508823..3509380 within 0


Gene organization within MGE regions


Location: 3504212..3515380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB79_RS15965 (DMB79_000015965) - 3505303..3505722 (-) 420 WP_116155442.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DMB79_RS15970 (DMB79_000015970) uvrA 3505738..3508572 (-) 2835 WP_116186272.1 excinuclease ABC subunit UvrA -
  DMB79_RS15975 (DMB79_000015975) ssb 3508823..3509380 (+) 558 WP_116155441.1 single-stranded DNA-binding protein SSB1 Machinery gene
  DMB79_RS15980 (DMB79_000015980) - 3510000..3511901 (+) 1902 WP_116166334.1 reverse transcriptase domain-containing protein -
  DMB79_RS15985 (DMB79_000015985) - 3512215..3512484 (-) 270 WP_368726618.1 molecular chaperone DnaJ -
  DMB79_RS15990 (DMB79_000015990) - 3512676..3514430 (+) 1755 WP_116186270.1 hypothetical protein -
  DMB79_RS15995 (DMB79_000015995) - 3514566..3514727 (+) 162 Protein_3115 transposase -
  DMB79_RS16000 (DMB79_000016000) - 3514922..3515380 (+) 459 WP_102117304.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19641.59 Da        Isoelectric Point: 5.7683

>NTDB_id=1022716 DMB79_RS15975 WP_116155441.1 3508823..3509380(+) (ssb) [Pectobacterium aquaticum strain A101-S19-F16]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NHSSTSNAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1022716 DMB79_RS15975 WP_116155441.1 3508823..3509380(+) (ssb) [Pectobacterium aquaticum strain A101-S19-F16]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GCGGTTGGGGCCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAACAGCGTCCAGCACAG
AACCATTCCTCTACAAGCAATGCTCCAGCGCAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.588

100

0.714
  ssb Glaesserella parasuis strain SC1401

55.789

100

0.573
  ssb Neisseria gonorrhoeae MS11

45.604

98.378

0.449
  ssb Neisseria meningitidis MC58

45.604

98.378

0.449

Multiple sequence alignment