Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DUT67_RS03815 Genome accession   NZ_CP161826
Coordinates   848114..848677 (-) Length   187 a.a.
NCBI ID   WP_048262203.1    Uniprot ID   -
Organism   Pectobacterium peruviense strain A350-S18-N16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 843114..853677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUT67_RS03790 (DUT67_03790) - 843460..843891 (+) 432 WP_039293554.1 GNAT family N-acetyltransferase -
  DUT67_RS03795 (DUT67_03795) - 844032..844463 (+) 432 WP_113626774.1 carboxymuconolactone decarboxylase family protein -
  DUT67_RS03800 (DUT67_03800) - 844584..845174 (-) 591 WP_039293551.1 hypothetical protein -
  DUT67_RS03805 (DUT67_03805) - 845362..845820 (-) 459 WP_113632781.1 GNAT family N-acetyltransferase -
  DUT67_RS03810 (DUT67_03810) - 846012..847868 (-) 1857 WP_113632782.1 amidohydrolase -
  DUT67_RS03815 (DUT67_03815) ssb 848114..848677 (-) 564 WP_048262203.1 single-stranded DNA-binding protein Machinery gene
  DUT67_RS03820 (DUT67_03820) uvrA 848931..851765 (+) 2835 WP_113632783.1 excinuclease ABC subunit UvrA -
  DUT67_RS03825 (DUT67_03825) - 851783..852202 (+) 420 WP_113632784.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DUT67_RS03830 (DUT67_03830) vapB 852981..853208 (+) 228 WP_011095187.1 type II toxin-antitoxin system VapB family antitoxin -
  DUT67_RS03835 (DUT67_03835) - 853205..853621 (+) 417 WP_113632785.1 type II toxin-antitoxin system VapC family toxin -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19773.70 Da        Isoelectric Point: 5.2456

>NTDB_id=1022663 DUT67_RS03815 WP_048262203.1 848114..848677(-) (ssb) [Pectobacterium peruviense strain A350-S18-N16]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPA
QNSSSSQNNAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=1022663 DUT67_RS03815 WP_048262203.1 848114..848677(-) (ssb) [Pectobacterium peruviense strain A350-S18-N16]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATT
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGTTACACCACCGAAGTGGTCGTTAACGTCGG
CGGCACCATGCAGATGTTAGGTGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGTCAACAGC
AAGGCGGTTGGGGTCAACCTCAACAACCGCAGGGCGGCAACCAGTTCAGTGGCGGTGCGCAAGCTCAACAGCGCCCAGCT
CAGAACTCGTCTTCCTCACAAAATAATGCTCCGGCACAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCTTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.958

100

0.727
  ssb Glaesserella parasuis strain SC1401

55.208

100

0.567
  ssb Neisseria meningitidis MC58

43.878

100

0.46
  ssb Neisseria gonorrhoeae MS11

44.444

100

0.449
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.158

97.861

0.364

Multiple sequence alignment