Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DUT67_RS01235 Genome accession   NZ_CP161826
Coordinates   264657..266183 (-) Length   508 a.a.
NCBI ID   WP_113626890.1    Uniprot ID   -
Organism   Pectobacterium peruviense strain A350-S18-N16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 259657..271183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUT67_RS01210 (DUT67_01210) ytfR 259812..261332 (+) 1521 WP_113626886.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  DUT67_RS01215 (DUT67_01215) ytfT 261319..262329 (+) 1011 WP_113632706.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  DUT67_RS01220 (DUT67_01220) yjfF 262329..263291 (+) 963 WP_113626888.1 galactofuranose ABC transporter, permease protein YjfF -
  DUT67_RS01225 (DUT67_01225) hdfR 263313..264140 (-) 828 WP_113626889.1 HTH-type transcriptional regulator HdfR -
  DUT67_RS01230 (DUT67_01230) - 264261..264599 (+) 339 WP_048262976.1 DUF413 domain-containing protein -
  DUT67_RS01235 (DUT67_01235) comM 264657..266183 (-) 1527 WP_113626890.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DUT67_RS01240 (DUT67_01240) ilvL 266579..266677 (+) 99 WP_072062072.1 ilv operon leader peptide -
  DUT67_RS01245 (DUT67_01245) ilvG 266818..268464 (+) 1647 WP_113632705.1 acetolactate synthase 2 catalytic subunit -
  DUT67_RS01250 (DUT67_01250) ilvM 268522..268782 (+) 261 WP_011095699.1 acetolactate synthase 2 small subunit -
  DUT67_RS01255 (DUT67_01255) - 268807..269733 (+) 927 WP_113632704.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55684.44 Da        Isoelectric Point: 6.8210

>NTDB_id=1022659 DUT67_RS01235 WP_113626890.1 264657..266183(-) (comM) [Pectobacterium peruviense strain A350-S18-N16]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLNRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSDMTPVPQLEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRSPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRAKKINALLTSREIEKHCKLEMADAAYLEDVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERRHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1022659 DUT67_RS01235 WP_113626890.1 264657..266183(-) (comM) [Pectobacterium peruviense strain A350-S18-N16]
ATGTCATTGGCAGTTACCTACACTCGGGCAATGATTGGTGTACAAGCACCGGATGTTTACATCGAAGTTCACATCAGCAG
CGGATTACCTGCATTAACACTGGTGGGGTTACCAGAAACCACCGTCAAAGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGTGGGTTTACGTTTCCGGCAAAACGCATCACAGTCAACCTCGCTCCGGCAGACTTGCCCAAAGAAGGGGGACGC
TACGACCTACCTATTGCTCTGGCGATTCTGGCTGCATCAGAACAAATCGATGGTGAAAAGCTAAACCGCTACGAGTTTCT
CGGCGAGCTCGGCCTGTCAGGTACGTTACGTGGCGTAAATGGCGCGATTCCAGCCGCACTAGAAGCCATAAAAGCAGGCC
GTCAGCTTATCCTGCCAGATGACAACAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTAATGGCTGGGCATTTG
TTGGAAGTGTGTGCTTTTCTCAGCGGAGAAGAAGAGTTACTCAGTTGCTCCGATATGACGCCCGTTCCGCAACTTGAGGA
AGATACACTCGACCTGAAGGATATTATCGGCCAGGAACAAGCTAAACGTGCGCTAGAGATCGCGGCAGCAGGCGGTCACA
ACCTGCTATTGCTAGGGCCACCGGGAACAGGAAAAACCATGCTGGCAAGTCGGCTAGGCAACCTGATGCCGCCATTGAGC
GATGAAGAAGCGTTAGAAAGCGCCGCGATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCAAGGCC
CTTCAGATCGCCTCACCATAGCTCTTCCATGGCTGCACTCGTGGGCGGAGGCTCGCTACCCAAACCCGGAGAAATTTCGC
TCGCACACAACGGTGTCCTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTTTGGACTCACTACGAGAGCCTCTG
GAATCCGGTGAAATTATCATTTCCCGTACCCGCGCCAAAGTGTGCTATCCGGCACGCGTCCAGCTTGTCGCCGCAATGAA
CCCCAGTCCATCAGGACATTATCAGGGCATTCATAACCGGCTGCCTGCACAACAAATACTGCGTTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTCCCTTTACTACCACCAGGGGTTTTATCTCAACAACATTAT
CAAGGCGAAAGCAGCGCGACGATTCGCGAGCGTGTGTTGATCGCAAGGCAGATACAGTTGAAGCGGGCAAAGAAAATCAA
TGCGCTGCTAACTTCACGCGAAATAGAAAAACACTGCAAACTGGAGATGGCTGATGCGGCCTATCTGGAAGACGTAATGA
ATAAACTTGGCTTATCCGTACGCGCTTGGCACAGAATATTGAAAGTCGCACGCACGATCGCTGACCTCGGCGATCGGGAC
AACATTGAGAGAAGGCATCTTGCTGAAGCGTTGAGTTACCGCTGTATGGATCGATTGCTTATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.458

100

0.636
  comM Haemophilus influenzae Rd KW20

63.636

99.606

0.634
  comM Vibrio campbellii strain DS40M4

62.823

99.016

0.622
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.693

100

0.472

Multiple sequence alignment