Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB1N68_RS21945 Genome accession   NZ_CP161342
Coordinates   4842366..4843856 (+) Length   496 a.a.
NCBI ID   WP_367598437.1    Uniprot ID   -
Organism   Pseudomonas fulva strain NY14325     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4837366..4848856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1N68_RS21925 (AB1N68_21925) - 4837750..4839081 (-) 1332 WP_023532646.1 ammonium transporter -
  AB1N68_RS21930 (AB1N68_21930) glnK 4839129..4839467 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  AB1N68_RS21935 (AB1N68_21935) - 4839831..4840088 (+) 258 WP_367598435.1 accessory factor UbiK family protein -
  AB1N68_RS21940 (AB1N68_21940) - 4840124..4842133 (-) 2010 WP_367598436.1 DUF4034 domain-containing protein -
  AB1N68_RS21945 (AB1N68_21945) comM 4842366..4843856 (+) 1491 WP_367598437.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB1N68_RS21950 (AB1N68_21950) - 4844068..4844532 (+) 465 WP_145125900.1 helix-turn-helix domain-containing protein -
  AB1N68_RS21955 (AB1N68_21955) - 4844532..4845107 (+) 576 WP_145125898.1 PIN domain-containing protein -
  AB1N68_RS21960 (AB1N68_21960) - 4845276..4846052 (+) 777 WP_367598438.1 alpha/beta fold hydrolase -
  AB1N68_RS21965 (AB1N68_21965) - 4846052..4846849 (+) 798 WP_367598439.1 SDR family NAD(P)-dependent oxidoreductase -
  AB1N68_RS21970 (AB1N68_21970) - 4846980..4847891 (+) 912 WP_196131898.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52789.55 Da        Isoelectric Point: 7.8847

>NTDB_id=1022423 AB1N68_RS21945 WP_367598437.1 4842366..4843856(+) (comM) [Pseudomonas fulva strain NY14325]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPARRITQNLAPADLPKDGGR
YDLAIALGILAADAQVPVAALAELECLGELALSGTLRPVQGVLPAALAAREAGRALVVPRENAEEASLASGLMVYAVGHL
LELVAHLNGQVPLAAYAANGLLLNPRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQISRYRNKLSGPLLDRIDLHLTVARENTTLNNQPCG
QSSADVARQVAHAREVQQRRQGCANAFLNLDGLRQHCSLAAPDQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCTAI
GRVHLAEALQYRPGSG

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1022423 AB1N68_RS21945 WP_367598437.1 4842366..4843856(+) (comM) [Pseudomonas fulva strain NY14325]
ATGTCTTTAGCCCTTGTCCACAGCCGCGCCCAGGTAGGCGTACAGGCCCCGGCCGTCAGCGTCGAAACCCACCTGGCCAA
TGGCTTGCCTCATCTCACACTGGTCGGCTTGCCCGAAACCACGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCG
TCAACAGTGGCCTGAATTACCCAGCCCGGCGCATCACGCAAAACCTCGCGCCGGCCGACCTGCCCAAGGACGGTGGCCGC
TATGACCTGGCCATCGCCCTGGGCATCCTGGCAGCCGACGCCCAAGTGCCCGTGGCCGCCCTGGCCGAGCTCGAATGCCT
GGGCGAGCTGGCGCTGTCGGGCACGTTGCGGCCGGTGCAGGGCGTCTTGCCCGCAGCGCTTGCCGCACGCGAGGCTGGCC
GGGCGCTGGTGGTGCCCCGTGAAAATGCCGAGGAAGCCAGCCTTGCCAGTGGCCTGATGGTGTATGCCGTAGGCCATCTA
TTGGAACTGGTGGCCCACCTGAACGGACAGGTACCGTTAGCTGCCTACGCCGCCAATGGCTTGCTTCTGAACCCTCGCCC
CTACCCCGACCTGAGCGAGGTGCAAGGGCAACTGGCGGCCAAACGCGCACTGCTGCTGGCCGCTGCCGGAGCGCACAACC
TGCTTTTCACAGGGCCGCCAGGTACCGGCAAAACCTTATTGGCCAGCCGCCTGCCGGGCCTGCTGCCACCGCTGGATGAG
CATGAAGCGCTGGAGGTCGCCGCCATCCAGTCGGTCAGCGGCCACACCCCGCTGAACAGCTGGCCACAGCGACCGTTTCG
CCACCCTCATCATTCCGCCTCCGGACCTGCGCTGGTGGGTGGCGGAAGCCGGCCGCAGCCCGGGGAAATCACCTTGGCCC
ACCACGGGGTGCTGTTTCTGGACGAGTTGCCCGAATTCGAGCGCCGGGTACTGGAGGTGCTGCGTGAACCCCTGGAATCT
GGCGAGATCGTGATCGCCAGGGCGCGGGATAAAGTGCGCTTTCCCGCCCGCTTTCAGCTCGTCGCTGCCATGAATCCCTG
CCCTTGCGGCTACCTGGGCGACCCTACAGGGCGATGCCGCTGCAGCACCGAGCAGATCTCCCGTTACCGCAACAAGCTGT
CAGGCCCGCTACTGGACCGGATCGACTTGCACCTGACCGTGGCGCGCGAGAACACCACACTCAACAACCAGCCTTGCGGG
CAAAGCAGCGCCGACGTCGCCCGCCAGGTCGCGCACGCCCGGGAGGTGCAACAACGTCGGCAAGGGTGCGCCAATGCATT
CCTCAACCTCGATGGCCTGCGCCAGCACTGTAGCTTGGCAGCACCTGATCAGGCTTGGTTGGAAGGCGCCTGTGAACGAT
TGACGCTGTCGCTGCGAGCAGCACACCGATTGCTCAAGGTCGCCCGAACACTGGCAGACCTCGAGGGATGCACGGCAATT
GGCCGGGTGCATCTGGCTGAGGCCCTGCAGTACCGTCCCGGGAGTGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio campbellii strain DS40M4

55.444

100

0.554
  comM Vibrio cholerae strain A1552

55.152

99.798

0.55
  comM Glaesserella parasuis strain SC1401

53.877

100

0.546
  comM Legionella pneumophila str. Paris

49.899

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.899

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.72

100

0.474

Multiple sequence alignment