Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   AB1O90_RS00435 Genome accession   NZ_CP161340
Coordinates   92263..94437 (+) Length   724 a.a.
NCBI ID   WP_160211249.1    Uniprot ID   -
Organism   Pediococcus pentosaceus strain RS-1     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 87263..99437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1O90_RS00410 (AB1O90_00410) - 87915..88673 (+) 759 WP_002834215.1 ChbG/HpnK family deacetylase -
  AB1O90_RS00415 (AB1O90_00415) - 89053..89331 (-) 279 WP_002834213.1 bacteriocin immunity protein -
  AB1O90_RS00420 (AB1O90_00420) - 89346..89528 (-) 183 WP_011672822.1 class II bacteriocin -
  AB1O90_RS00425 (AB1O90_00425) - 89966..91264 (+) 1299 WP_011672823.1 sensor histidine kinase -
  AB1O90_RS00430 (AB1O90_00430) - 91283..92029 (+) 747 WP_011672824.1 LytTR family DNA-binding domain-containing protein -
  AB1O90_RS00435 (AB1O90_00435) comA/nlmT 92263..94437 (+) 2175 WP_160211249.1 peptide cleavage/export ABC transporter Regulator
  AB1O90_RS00440 (AB1O90_00440) - 94720..95634 (-) 915 WP_011672826.1 metal ABC transporter solute-binding protein -
  AB1O90_RS00445 (AB1O90_00445) - 95705..95824 (-) 120 WP_011672827.1 putative metal homeostasis protein -
  AB1O90_RS00450 (AB1O90_00450) - 96412..96804 (+) 393 WP_011672828.1 hypothetical protein -
  AB1O90_RS00455 (AB1O90_00455) - 96896..97414 (-) 519 WP_011672829.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 724 a.a.        Molecular weight: 81497.36 Da        Isoelectric Point: 9.6667

>NTDB_id=1022358 AB1O90_RS00435 WP_160211249.1 92263..94437(+) (comA/nlmT) [Pediococcus pentosaceus strain RS-1]
MRSQKWQKFYTAQVDENDCGVAALNMVLKYYGSNYTLAHLRNLAKTTNDGTTALGIVEAAKHLNLNAEAVRTDIDFFSDF
QITFPVIVHVLKDNYLPHYYVVYQVTKTSLIIGDPDPTVNTTTISKARFIKEWTKIAIMITPNIKYKPTKEPRHTLINLV
PLLIKQKKLISLIISAAFLTTLISIAGTYFFQLIIDTYLPQMLTNTLTLVAIGLIAAYLFQAAISYIQSLLTIILGQRLM
VDIILKYVHHLFNLPMAFFATRHVGEITSRFSDASKIIDALGNIMMTLFLDMWILIAVGAFLAYKNIILFLISLIVIPIY
IIIVWIFKKTFHRLNQATMESSAIVNSAIIESLSGIETIKALTGESATKKKIDVLFCDLLRKNLAYQKADQGQQAIKMAT
KLILTVVILWIGTIFVMQHQLSLGQLLTYNALLLYFLTPLENIINLQSKLQSARVANNRLNEIYLVQSEFSKPRMINESY
QLNGDITVNNVNFKYGYSSNTLKNISLTIHRNQKVTIVGMSGSGKTTLAKLLIGFYEIQEQCGNIQINQHNINDISRKVL
RQYINYIPQEPFIFSGTVLDNLLLGSRPNLTQETIDQACSFAEIKADIEKLSQGYYTKLSESGSDLSGGQKQRLSIARAL
LSPAKCLIFDESTSSLDTITEHKIISNLMDMKGKTIIFIAHRLNIAAQTDKVIVLDKGTVVEQGSHQQLLNLNGYYTRLI
NRQG

Nucleotide


Download         Length: 2175 bp        

>NTDB_id=1022358 AB1O90_RS00435 WP_160211249.1 92263..94437(+) (comA/nlmT) [Pediococcus pentosaceus strain RS-1]
ATGCGGTCTCAAAAATGGCAAAAATTTTATACAGCTCAAGTTGATGAAAATGACTGCGGAGTGGCTGCGCTAAATATGGT
TCTTAAGTATTATGGCTCTAATTACACATTGGCACATTTACGTAATCTTGCTAAAACTACTAATGATGGCACCACGGCTC
TAGGCATTGTGGAAGCTGCGAAACACCTAAACTTAAACGCCGAAGCTGTGCGTACAGATATAGATTTTTTTTCTGATTTC
CAAATAACGTTTCCTGTTATCGTCCATGTTTTAAAAGATAACTATTTACCACACTATTATGTTGTTTATCAAGTCACTAA
GACAAGTTTAATTATTGGTGACCCTGATCCAACCGTTAATACTACTACAATATCAAAAGCTCGATTTATCAAAGAATGGA
CCAAAATTGCAATTATGATAACTCCAAATATTAAATATAAACCTACAAAAGAGCCACGACATACACTAATTAATTTAGTA
CCCTTGTTAATCAAACAAAAAAAATTGATTAGTTTAATTATCAGTGCGGCGTTTTTAACGACATTAATTAGTATTGCTGG
TACATATTTTTTTCAATTAATTATTGATACTTACCTACCTCAAATGTTAACCAATACTTTAACGTTAGTTGCTATCGGTC
TAATTGCAGCGTATCTTTTTCAAGCAGCTATTAGTTATATCCAAAGCTTACTCACAATTATATTGGGACAACGACTTATG
GTTGATATCATTCTGAAATATGTTCACCATCTTTTTAATTTACCCATGGCCTTTTTTGCTACTCGGCATGTAGGTGAAAT
AACATCGCGATTTTCTGATGCTAGTAAAATTATTGATGCGCTTGGAAACATTATGATGACGTTATTTTTGGATATGTGGA
TTTTAATTGCAGTAGGTGCCTTTTTAGCTTATAAAAATATTATTTTATTTTTAATTTCATTGATTGTAATTCCAATATAT
ATAATAATCGTTTGGATATTTAAAAAAACTTTCCATCGGTTAAATCAAGCCACAATGGAAAGTAGTGCTATCGTTAACTC
AGCTATTATTGAAAGTTTAAGTGGTATAGAAACCATTAAGGCTTTGACAGGTGAATCAGCCACAAAAAAGAAGATTGACG
TTCTTTTTTGTGATTTATTACGAAAAAATTTAGCTTATCAAAAGGCTGATCAAGGACAACAAGCTATTAAAATGGCTACT
AAATTGATTTTGACCGTTGTTATCCTCTGGATAGGTACAATTTTTGTAATGCAACATCAACTTTCTTTAGGGCAACTGTT
AACCTACAATGCGTTACTTTTGTACTTTCTAACACCGTTAGAAAATATAATTAATTTACAATCTAAATTACAATCAGCAC
GAGTAGCAAATAACCGATTAAATGAGATTTATCTTGTTCAGTCTGAATTTTCAAAACCAAGGATGATTAATGAATCCTAT
CAATTGAATGGTGATATTACGGTCAATAATGTTAATTTTAAATACGGATATAGTTCTAATACGCTTAAAAATATTTCTTT
AACAATTCATCGTAATCAAAAAGTTACGATCGTAGGTATGAGTGGATCTGGTAAAACAACTCTTGCTAAATTATTAATTG
GTTTTTACGAGATCCAAGAACAATGTGGTAACATTCAAATTAATCAGCATAATATAAATGATATTAGTCGCAAGGTTCTA
CGGCAGTACATCAATTATATCCCTCAGGAACCCTTTATTTTTTCTGGTACCGTTTTAGACAACTTATTATTGGGTAGTCG
GCCTAATTTAACCCAAGAAACGATTGATCAAGCTTGTTCTTTTGCTGAAATTAAAGCGGACATTGAAAAATTATCTCAAG
GCTACTACACTAAATTAAGCGAAAGTGGTTCTGATTTATCCGGTGGACAAAAACAACGGTTATCAATAGCTCGTGCATTA
TTGTCTCCAGCAAAGTGTCTAATTTTTGACGAATCGACTAGTAGCTTAGACACAATTACTGAACACAAGATTATATCTAA
TTTGATGGATATGAAGGGTAAAACGATAATTTTTATTGCTCATCGTCTTAACATTGCAGCTCAAACTGATAAAGTCATTG
TACTTGATAAAGGGACGGTTGTTGAGCAAGGCTCTCACCAACAACTATTAAATCTTAACGGTTATTACACAAGATTAATT
AACAGACAAGGATAG

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(10-143)

ABC transporter transmembrane region (ABC_membrane)

(172-440)

ABC transporter (ABC_tran)

(502-654)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

51.253

99.171

0.508
  comA Streptococcus gordonii str. Challis substr. CH1

50.49

98.757

0.499
  comA Streptococcus mitis NCTC 12261

49.93

98.757

0.493
  comA Streptococcus pneumoniae TIGR4

49.371

98.757

0.488
  comA Streptococcus pneumoniae D39

49.371

98.757

0.488
  comA Streptococcus pneumoniae Rx1

49.371

98.757

0.488
  comA Streptococcus pneumoniae R6

49.371

98.757

0.488
  comA Streptococcus mitis SK321

49.231

98.757

0.486

Multiple sequence alignment