Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   STAB902_RS00605 Genome accession   NZ_CP007041
Coordinates   98616..99044 (+) Length   142 a.a.
NCBI ID   WP_002986548.1    Uniprot ID   -
Organism   Streptococcus pyogenes STAB902     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 93616..104044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAB902_RS00585 (STAB902_00610) - 95947..96312 (+) 366 WP_002986560.1 DUF1033 family protein -
  STAB902_RS00590 (STAB902_00615) comGA 96405..97343 (+) 939 WP_011054114.1 competence type IV pilus ATPase ComGA Machinery gene
  STAB902_RS00595 (STAB902_00620) comGB 97279..98313 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  STAB902_RS00600 (STAB902_00625) comGC 98315..98641 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  STAB902_RS00605 (STAB902_00630) comGD 98616..99044 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD Machinery gene
  STAB902_RS00610 (STAB902_00635) comGE 99001..99285 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE Machinery gene
  STAB902_RS00615 (STAB902_00640) comGF 99278..99712 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  STAB902_RS00620 (STAB902_00645) comGG 99696..100022 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  STAB902_RS00625 (STAB902_00650) comGH 100120..101073 (+) 954 WP_011054117.1 class I SAM-dependent methyltransferase Machinery gene
  STAB902_RS00630 (STAB902_00655) - 101132..102328 (+) 1197 WP_010921803.1 acetate kinase -
  STAB902_RS00635 (STAB902_00660) - 102529..102837 (+) 309 WP_011054118.1 hypothetical protein -
  STAB902_RS00640 (STAB902_00665) proC 102920..103690 (-) 771 WP_002992745.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16310.04 Da        Isoelectric Point: 10.3481

>NTDB_id=102235 STAB902_RS00605 WP_002986548.1 98616..99044(+) (comGD) [Streptococcus pyogenes STAB902]
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTE
GNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=102235 STAB902_RS00605 WP_002986548.1 98616..99044(+) (comGD) [Streptococcus pyogenes STAB902]
ATGAAAAAGCCCGTCTTAGCAATTAAAGCTTTTACTTTGCTTGAAACTTTACTAAGTTTGTCAGTGATGAGTTTCATTAT
ATTGGGATTGTCTGTACCAGTGACAAAAAGCTATCAAAAAGTAGAAGAGCATCTATTTTTTAGCCATTTTGAACATTTGT
ATCGACATCAGCAAAAGTTAGCCATATTACAGCAAAAACAGCGCGTCTTGGATATTTCTTCAACAAAAATTGTTACAGAA
GGTAATAGCCTAACAGTTCCTAAATCAATAACAGTGAATCATCCTTATCGGTTAGTTATTGATCAGATGGGAGGCAACCA
TTCCTTAGCTAAAATTATTTTTGACATGACTGATCGACGCTTTAAATACCAATTTTATCTAGGGAGTGGGAATTATCAAA
AAACAAGTCAAAGCTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

40.441

95.775

0.387
  comGD Streptococcus gordonii str. Challis substr. CH1

40.458

92.254

0.373
  comGD/cglD Streptococcus mitis SK321

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae Rx1

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae D39

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae R6

39.695

92.254

0.366

Multiple sequence alignment