Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABVF20_RS08730 Genome accession   NZ_CP160999
Coordinates   2004823..2006001 (+) Length   392 a.a.
NCBI ID   WP_370389596.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer07     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1999823..2011001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF20_RS08710 (ABVF20_14875) - 2000914..2002122 (+) 1209 WP_370389974.1 PilT/PilU family type 4a pilus ATPase -
  ABVF20_RS08715 (ABVF20_09625) murU 2002228..2002932 (+) 705 WP_267392022.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ABVF20_RS08720 (ABVF20_09630) ruvC 2003053..2003604 (+) 552 WP_267392024.1 crossover junction endodeoxyribonuclease RuvC -
  ABVF20_RS08725 (ABVF20_14880) - 2003714..2004499 (-) 786 WP_370389595.1 DUF2071 domain-containing protein -
  ABVF20_RS08730 (ABVF20_09645) dprA 2004823..2006001 (+) 1179 WP_370389596.1 DNA-processing protein DprA Machinery gene
  ABVF20_RS08735 (ABVF20_09650) - 2006013..2006471 (+) 459 WP_370388799.1 DUF494 family protein -
  ABVF20_RS08740 (ABVF20_09655) topA 2006611..2008905 (+) 2295 WP_367489752.1 type I DNA topoisomerase -
  ABVF20_RS08745 (ABVF20_09660) rsmD 2008985..2009557 (+) 573 WP_367577657.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABVF20_RS08750 (ABVF20_09665) - 2009646..2009900 (+) 255 WP_267409014.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 42468.78 Da        Isoelectric Point: 6.3682

>NTDB_id=1022268 ABVF20_RS08730 WP_370389596.1 2004823..2006001(+) (dprA) [Snodgrassella alvi strain Acer07]
MNELERYAWIELALTPYIGSETFLRILKHFGSAQIALAADVAEIKPFLIRSRAGQYWRSEEARKAAEAALQWEQKHENAR
LLLLAENDYPPLLSEGLTPPPLLFIRGNIHYLQQPSLAIVGSRHATPQAMRIARDFAKALAQKEIAVISGMADGIDTAAH
QGALLGKGTTVAVWGTGIDRVYPARNKSLAAEIAEHGCIISEFPLGTRSLAGNFPRRNRLIAALSQGTLVIEAATESGSL
ITARLAGEMGREVMAIPGSIDNPLSKGCHALIKQGAKLVENLDDILHECPFLLQKTQVHSYSHQSSQFIQSDTPVLLVEE
TEDILLDKTAVSALTSPEKQILDGLGHGIVHPDTLVSTLGIPATDVYANLMALELGGWITALPGGCYQRIKS

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1022268 ABVF20_RS08730 WP_370389596.1 2004823..2006001(+) (dprA) [Snodgrassella alvi strain Acer07]
ATGAATGAGCTCGAGCGCTATGCTTGGATTGAGCTGGCATTAACCCCCTATATTGGCAGTGAAACATTTTTACGTATCTT
AAAACATTTTGGTTCAGCACAAATCGCTTTGGCCGCAGATGTGGCTGAAATTAAACCTTTCCTGATTCGTTCTCGGGCCG
GTCAATACTGGCGCAGTGAGGAAGCAAGAAAAGCAGCTGAAGCCGCCCTGCAATGGGAGCAAAAGCATGAAAATGCACGC
TTATTATTGCTGGCTGAAAATGATTATCCACCATTGCTTTCTGAAGGTTTGACACCGCCTCCATTATTATTTATACGTGG
TAACATCCATTATCTGCAACAGCCCTCATTGGCTATTGTTGGCAGCCGACATGCAACGCCACAAGCAATGCGTATTGCCC
GTGATTTTGCCAAGGCATTAGCACAAAAAGAAATTGCTGTGATATCGGGCATGGCTGATGGTATAGATACCGCAGCCCAT
CAAGGTGCTTTACTTGGCAAAGGTACTACTGTTGCCGTCTGGGGCACAGGAATTGATCGCGTGTATCCGGCACGCAACAA
ATCATTGGCTGCTGAAATTGCCGAACATGGCTGTATAATTTCAGAATTTCCACTAGGCACTCGTTCTTTGGCCGGTAACT
TTCCCCGTCGCAATCGCCTGATTGCAGCACTCAGCCAAGGTACCCTAGTGATAGAGGCTGCAACCGAATCTGGCTCCCTG
ATTACTGCGCGATTGGCCGGTGAAATGGGTCGTGAAGTTATGGCAATACCTGGTTCGATTGATAACCCATTAAGCAAAGG
TTGTCATGCATTGATAAAACAGGGTGCCAAACTGGTTGAAAATCTAGATGATATACTTCATGAGTGCCCTTTCCTCTTGC
AAAAAACGCAAGTGCATTCATATAGCCATCAATCTTCACAATTTATTCAATCAGATACACCTGTACTGCTTGTTGAAGAG
ACTGAAGATATCTTATTAGACAAAACAGCTGTATCAGCACTCACATCGCCGGAGAAACAAATTCTGGATGGATTAGGTCA
TGGTATCGTACATCCAGATACACTGGTCTCAACACTTGGCATCCCTGCTACAGATGTGTATGCTAATCTTATGGCACTGG
AGCTAGGTGGCTGGATTACCGCACTGCCGGGTGGTTGTTATCAACGCATTAAATCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-280)

DprA winged helix domain (DprA_WH)

(330-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

58.293

100

0.61
  dprA Neisseria meningitidis MC58

58.293

100

0.61
  dprA Neisseria gonorrhoeae strain FA1090

58.706

100

0.602
  dprA Neisseria gonorrhoeae MS11

58.209

100

0.597
  dprA Vibrio cholerae strain A1552

37.215

100

0.375
  dprA Vibrio campbellii strain DS40M4

37.113

98.98

0.367

Multiple sequence alignment