Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB2N10_RS15535 Genome accession   NZ_CP160906
Coordinates   3401821..3402435 (-) Length   204 a.a.
NCBI ID   WP_354623278.1    Uniprot ID   -
Organism   Psychromonas sp. MME1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3396821..3407435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2N10_RS15515 - 3397291..3398115 (-) 825 WP_354623274.1 ABC transporter substrate-binding protein -
  AB2N10_RS15520 - 3398459..3399076 (+) 618 WP_369434075.1 OB-fold-containig protein -
  AB2N10_RS15525 - 3399119..3400855 (+) 1737 WP_354623276.1 flotillin domain-containing protein -
  AB2N10_RS15530 - 3400937..3401635 (-) 699 WP_369434681.1 VC0807 family protein -
  AB2N10_RS15535 ssb 3401821..3402435 (-) 615 WP_354623278.1 single-stranded DNA-binding protein Machinery gene
  AB2N10_RS15540 - 3402486..3403853 (-) 1368 WP_369434076.1 MFS transporter -
  AB2N10_RS15545 - 3403994..3404836 (+) 843 WP_354623279.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  AB2N10_RS15550 - 3404894..3406390 (-) 1497 WP_369434077.1 hypothetical protein -
  AB2N10_RS15555 - 3406517..3407092 (+) 576 WP_354623282.1 nucleoside triphosphate pyrophosphohydrolase family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22808.28 Da        Isoelectric Point: 5.9402

>NTDB_id=1022242 AB2N10_RS15535 WP_354623278.1 3401821..3402435(-) (ssb) [Psychromonas sp. MME1]
MFNRSVNKVVLVGNLGKDPEMRYMPNGNAVANLTLATTESWKDKQTGDRQEKTEWHRLTVFNRLGEMCGEYLKKGAKIYV
EGKLQTRKWQGQDGQDRYTTEIVVDEIQMMDSRNPASGQAPYQANNAQANNQAPQQSWGNAPQQAAAPQMAPAYRQPQQA
APQQAAPAYQQPAPQQRQPASQAPQQAPAPYNEPSMDFDDDIPF

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1022242 AB2N10_RS15535 WP_354623278.1 3401821..3402435(-) (ssb) [Psychromonas sp. MME1]
ATGTTTAACCGTAGTGTAAACAAAGTGGTATTAGTCGGTAACCTAGGTAAAGATCCAGAAATGCGTTATATGCCTAATGG
TAATGCCGTCGCAAACTTAACACTTGCCACCACTGAAAGTTGGAAAGATAAGCAAACAGGCGATCGTCAAGAAAAAACAG
AATGGCACCGTTTAACTGTCTTTAATCGCCTTGGTGAAATGTGCGGCGAATACTTGAAAAAAGGGGCGAAAATTTACGTA
GAGGGTAAATTACAAACGCGTAAATGGCAGGGGCAAGATGGCCAAGACAGATACACAACTGAAATTGTTGTAGATGAGAT
CCAGATGATGGATTCACGCAATCCAGCATCAGGACAAGCACCATACCAAGCGAATAATGCCCAAGCAAATAATCAAGCGC
CACAACAAAGCTGGGGTAACGCTCCACAGCAAGCAGCAGCTCCACAAATGGCGCCTGCTTACCGTCAACCTCAACAAGCA
GCACCACAGCAAGCGGCACCCGCTTACCAGCAGCCAGCACCGCAACAACGTCAGCCAGCTAGCCAAGCGCCACAGCAAGC
ACCCGCACCTTATAACGAGCCTTCAATGGATTTCGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.952

100

0.525
  ssb Glaesserella parasuis strain SC1401

51.244

98.529

0.505
  ssb Neisseria meningitidis MC58

43.81

100

0.451
  ssb Neisseria gonorrhoeae MS11

43.5

98.039

0.426

Multiple sequence alignment