Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABX298_RS09760 Genome accession   NZ_CP160798
Coordinates   2219334..2220824 (+) Length   496 a.a.
NCBI ID   WP_286100753.1    Uniprot ID   -
Organism   Pseudomonas sp. X4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2214334..2225824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX298_RS09735 (ABX298_09735) - 2215005..2215700 (+) 696 WP_038410237.1 HAD family hydrolase -
  ABX298_RS09740 (ABX298_09740) sutA 2215932..2216261 (-) 330 WP_013974748.1 transcriptional regulator SutA -
  ABX298_RS09745 (ABX298_09745) - 2216691..2218022 (-) 1332 WP_025341075.1 ammonium transporter -
  ABX298_RS09750 (ABX298_09750) glnK 2218069..2218407 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ABX298_RS09755 (ABX298_09755) - 2218928..2219194 (+) 267 WP_025341076.1 accessory factor UbiK family protein -
  ABX298_RS09760 (ABX298_09760) comM 2219334..2220824 (+) 1491 WP_286100753.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABX298_RS09765 (ABX298_09765) - 2221048..2221416 (-) 369 WP_075046733.1 response regulator transcription factor -
  ABX298_RS09770 (ABX298_09770) - 2221413..2222405 (-) 993 WP_075046734.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52791.48 Da        Isoelectric Point: 7.7255

>NTDB_id=1022076 ABX298_RS09760 WP_286100753.1 2219334..2220824(+) (comM) [Pseudomonas sp. X4]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTATLAEVECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHAPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAAKVAEARELQQRRQGCANAFLDLEGLRRHCGLAAADQAWLEGACERLNLSLRAAHRLLKVARTLADLEGSQAI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1022076 ABX298_RS09760 WP_286100753.1 2219334..2220824(+) (comM) [Pseudomonas sp. X4]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCTTGCCCCATCTCACTCTGGTCGGTCTGCCGGAAACCACGGTCAAAGAGAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGGTTGAACTATCCGCAGCGGCGCATCACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACCTGGCCATTGCCCTGGGTATCCTCGCCGCCGATGGCCAGGTACCAACGGCCACCCTTGCCGAGGTCGAATGCCT
GGGCGAACTGGCGCTATCTGGCAAGTTGCGCCCGGTGCAGGGCGTGCTGCCCGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTGCCACGGGAAAACGCCGAGGAAGCCAGCCTGGCAGGCGGGTTGGTGGTGTATGCGGTGGGGCACCTG
CTGGAGCTGGTCGCCCACCTGAACGGCCAGGTGCCGTTGCCGCCGTATGCGGCCAACGGCCTGATCCTGCAGCAACGCCC
GTACCCGGACCTGAGCGAGGTGCAGGGCCAACTGGCTGCCAAGCGTGCACTGCTGCTAGCGGCGGCCGGGGCGCACAACC
TGTTGTTCACCGGGCCTCCCGGTACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCGGGGCTGCTGCCACCGCTGGACGAG
CACGAGGCACTGGAAGTGGCGGCGATCCAGTCGGTCAGCGGCCATGCGCCTCTGAGCAGCTGGCCGCAGCGGCCTTTTCG
CCATCCACACCACTCCGCCTCCGGCCCGGCGCTGGTCGGCGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTGGCCC
ACCATGGCGTGCTGTTTCTGGACGAACTGCCGGAATTCGAGCGGCGCGTGCTGGAGGTGTTGCGCGAGCCGCTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCCCGCGACAAGGTGCGCTTCCCGGCACGTTTCCAACTGGTGGCGGCAATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGTACCGAGCAGATCGCGCGGTATCGCAACAAGCTGT
CCGGGCCGCTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGGGAGAGCACCACGCTGAACAACCAGCCCTGCGGC
GAGACCAGTGCCGATGTGGCGGCCAAGGTAGCCGAGGCACGTGAACTGCAACAGCGGCGGCAAGGGTGTGCGAATGCGTT
TCTCGACCTTGAGGGGTTGCGCCGCCATTGTGGCTTGGCAGCGGCGGACCAGGCCTGGCTGGAGGGGGCCTGTGAACGGC
TGAACCTGTCGTTGCGCGCGGCACACCGGTTGTTGAAGGTGGCGCGGACGCTGGCGGATCTGGAAGGTAGCCAGGCAATT
GGCCGGGCGCATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio campbellii strain DS40M4

55.758

99.798

0.556
  comM Vibrio cholerae strain A1552

55.152

99.798

0.55
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

49.395

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.211

100

0.478

Multiple sequence alignment