Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   DQM87_RS07325 Genome accession   NZ_LS483384
Coordinates   1432858..1433526 (+) Length   222 a.a.
NCBI ID   WP_136076166.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13743     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1427858..1438526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM87_RS09640 - 1428065..1429137 (-) 1073 Protein_1347 IS3 family transposase -
  DQM87_RS07295 (NCTC13743_01464) - 1429257..1429574 (-) 318 WP_002994587.1 hypothetical protein -
  DQM87_RS07300 (NCTC13743_01465) - 1429623..1429850 (-) 228 WP_028797129.1 Blp family class II bacteriocin -
  DQM87_RS09750 - 1430248..1430376 (-) 129 WP_002994583.1 hypothetical protein -
  DQM87_RS09875 - 1430461..1430772 (-) 312 WP_225793061.1 CPBP family intramembrane glutamic endopeptidase -
  DQM87_RS09475 (NCTC13743_01467) - 1431067..1431243 (-) 177 WP_002994581.1 hypothetical protein -
  DQM87_RS07310 (NCTC13743_01468) - 1431221..1431445 (-) 225 WP_002994580.1 Blp family class II bacteriocin -
  DQM87_RS07315 (NCTC13743_01469) comA/nlmT 1431743..1431979 (+) 237 WP_002994577.1 cysteine peptidase family C39 domain-containing protein Regulator
  DQM87_RS09505 (NCTC13743_01470) - 1432084..1432869 (+) 786 Protein_1355 ABC transporter transmembrane domain-containing protein -
  DQM87_RS07325 (NCTC13743_01471) comA/nlmT 1432858..1433526 (+) 669 WP_136076166.1 ATP-binding cassette domain-containing protein Regulator
  DQM87_RS09645 comE/blpR 1433609..1433827 (-) 219 WP_072135532.1 LytTR family transcriptional regulator DNA-binding domain-containing protein Regulator
  DQM87_RS09650 (NCTC13743_01472) - 1434128..1434382 (+) 255 WP_011106868.1 hypothetical protein -
  DQM87_RS07340 (NCTC13743_01473) - 1434688..1435164 (-) 477 WP_014635332.1 NUDIX hydrolase -
  DQM87_RS07345 (NCTC13743_01474) era 1435184..1436080 (-) 897 WP_014635331.1 GTPase Era -
  DQM87_RS07350 (NCTC13743_01475) - 1436200..1436607 (-) 408 WP_002985746.1 diacylglycerol kinase family protein -
  DQM87_RS07355 (NCTC13743_01476) ybeY 1436588..1437085 (-) 498 WP_111703464.1 rRNA maturation RNase YbeY -
  DQM87_RS07360 (NCTC13743_01477) - 1437244..1437819 (-) 576 WP_111705183.1 uracil-DNA glycosylase family protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25552.42 Da        Isoelectric Point: 9.7189

>NTDB_id=1021940 DQM87_RS07325 WP_136076166.1 1432858..1433526(+) (comA/nlmT) [Streptococcus pyogenes strain NCTC13743]
MNGKISVGQLITFNTLLSYFTNPLENIINLQTKLQSAKVANNRLNEVYLVKSEFQKEQALTDTYCLYGDIQFADLSYKYG
FGRDTLSDISLTIKEGEKVSIVGISGSGKTTLAKMIVNFFEPYKGQISINHQNLKMIDKKVLRQHINYLPQQAHIFSGSI
LENLTLGANHSTSQEDILINIRNDIHILKFDTYFQTGQNIKKEKRIKRKIFHSYFIYIYFSM

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1021940 DQM87_RS07325 WP_136076166.1 1432858..1433526(+) (comA/nlmT) [Streptococcus pyogenes strain NCTC13743]
ATGAATGGTAAAATATCTGTTGGTCAACTCATCACTTTTAATACACTATTATCCTACTTTACTAATCCTTTGGAAAATAT
CATTAATCTTCAAACTAAACTGCAATCCGCTAAGGTAGCTAATAATCGTCTCAATGAAGTTTACCTGGTTAAATCTGAGT
TCCAAAAAGAACAGGCATTAACAGATACCTATTGTCTATATGGAGATATCCAATTTGCAGACTTGTCTTATAAATACGGC
TTTGGTCGTGATACCTTATCTGATATCAGTTTGACCATTAAGGAGGGTGAAAAAGTCAGTATAGTTGGTATTAGTGGTTC
TGGCAAGACAACATTAGCTAAAATGATTGTTAATTTCTTTGAACCTTACAAGGGACAGATTTCTATTAATCATCAAAATC
TTAAAATGATTGATAAAAAAGTGCTTCGTCAGCATATCAACTATCTCCCCCAACAAGCTCATATCTTTAGTGGATCTATC
TTAGAAAACTTAACCCTAGGTGCTAATCACTCCACTAGTCAAGAGGACATTCTGATAAATATCAGAAACGATATTCATAT
CTTGAAATTCGATACCTATTTCCAAACTGGGCAGAATATAAAAAAAGAAAAGCGTATAAAGCGAAAGATTTTTCACAGTT
ACTTTATATACATATACTTTAGCATGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(86-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

68.586

86.036

0.59
  comA Streptococcus pneumoniae Rx1

64.398

86.036

0.554
  comA Streptococcus pneumoniae D39

64.398

86.036

0.554
  comA Streptococcus pneumoniae R6

64.398

86.036

0.554
  comA Streptococcus mitis NCTC 12261

64.398

86.036

0.554
  comA Streptococcus mitis SK321

64.398

86.036

0.554
  comA Streptococcus pneumoniae TIGR4

63.874

86.036

0.55
  comA Streptococcus gordonii str. Challis substr. CH1

61.257

86.036

0.527