Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   DQM69_RS08975 Genome accession   NZ_LS483381
Coordinates   1842139..1844445 (-) Length   768 a.a.
NCBI ID   WP_032672998.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NCTC10921     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1837139..1849445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM69_RS10480 (NCTC10921_01778) - 1837340..1837516 (-) 177 WP_019777830.1 hypothetical protein -
  DQM69_RS08935 (NCTC10921_01779) - 1837976..1838152 (-) 177 WP_019769837.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DQM69_RS08940 (NCTC10921_01780) cipB 1838172..1838357 (-) 186 WP_019771033.1 hypothetical protein Regulator
  DQM69_RS08945 (NCTC10921_01781) - 1838439..1838612 (-) 174 WP_019790623.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DQM69_RS08950 (NCTC10921_01782) cipB 1838634..1838819 (-) 186 WP_019769836.1 hypothetical protein Regulator
  DQM69_RS08955 (NCTC10921_01783) - 1839113..1839304 (-) 192 WP_019771035.1 bacteriocin -
  DQM69_RS08960 (NCTC10921_01784) - 1839607..1839830 (-) 224 Protein_1696 garvicin Q family class II bacteriocin -
  DQM69_RS08965 (NCTC10921_01785) - 1840051..1841040 (-) 990 WP_111687998.1 IS30 family transposase -
  DQM69_RS08970 (NCTC10921_01786) comB/nlmE 1841202..1842125 (-) 924 WP_109982751.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  DQM69_RS08975 (NCTC10921_01787) comA/nlmT 1842139..1844445 (-) 2307 WP_032672998.1 peptide cleavage/export ABC transporter Regulator
  DQM69_RS08980 - 1844974..1846130 (-) 1157 Protein_1700 IS256 family transposase -
  DQM69_RS10485 (NCTC10921_01790) - 1846241..1846414 (-) 174 WP_019769622.1 hypothetical protein -
  DQM69_RS08985 (NCTC10921_01791) mutY 1847509..1848669 (+) 1161 WP_301950681.1 A/G-specific adenine glycosylase -
  DQM69_RS08990 (NCTC10921_01793) - 1848941..1849369 (+) 429 WP_002963029.1 YjdF family protein -

Sequence

Protein


Download         Length: 768 a.a.        Molecular weight: 85991.78 Da        Isoelectric Point: 8.2453

>NTDB_id=1021640 DQM69_RS08975 WP_032672998.1 1842139..1844445(-) (comA/nlmT) [Streptococcus sobrinus strain NCTC10921]
MKQITYIILIVALVIAVNIILEAFRRYFRSKRGKSSPQSSQAVAGSSSSVGLFWRRRYKFIPQVDTRDCGPAALASVAKH
YGSDYSLARLRELSKTDKQGTTALGLVEAAKAIGFETRSIKADMTLFDYTDLTYPFIVHVVKNKRLQHYYVVYGNDKNNL
IIGDPDPNVKVTRMSKQDFQEEWTGLAIFLAPTPNYKPKKDEKNGLMSFFPIILRQKALLTYIVLASLMVTLIDIVGSYY
LQGMLDEYIPDQLISTLGIITIGLIITYIIQQMMSFAKEYLLNVLSLRLVIDVILSYIKHIFTLPMSFFATRRTGEITSR
FSDANQIINAVASTIFSIFLDVTMLILVGGVLLVQNNHLFLLTLISIPIYAIIITAFLKPFEKMNHEVMEANAMVSSSII
EDINGMETIKSLTSESSRYQNIDGEFVDYLEKNFKLQKMNALQTSLKTGAKLILNVVILWYGARLVMDGKISVGQLITFN
ALLSYFQNPIENIISLQTKLQSARVANTRLNEVYLVESEFENDGELSEDSFLDGDISFEKLSYKYGYGRDTLSDINLTIA
KGSKVSLVGPSGSGKTTLAKMMVNFYDPNRGIARINGYDLKVIDKTALRQHISYLPQQAYVFSGTIMDNLTLGAKEGTTQ
EDIIRACEIAEIRSDIEQMPLGYQTELSDGAGVSGGQKQRIALARALLTQAPVLILDEATSSLDVLTEKKIVDNLMAMTD
KTVIFVAHRLSIAQRTDRIIVMDQGKIVEEGSHKELLANKGFYYTLFN

Nucleotide


Download         Length: 2307 bp        

>NTDB_id=1021640 DQM69_RS08975 WP_032672998.1 1842139..1844445(-) (comA/nlmT) [Streptococcus sobrinus strain NCTC10921]
ATGAAGCAGATCACCTATATTATTTTGATTGTAGCTCTTGTTATCGCAGTCAATATTATTTTAGAGGCCTTTAGACGCTA
CTTTAGATCTAAGAGAGGGAAGTCTAGTCCTCAATCATCTCAAGCAGTAGCTGGTTCTTCCAGTTCAGTTGGGCTATTTT
GGCGTAGGCGCTACAAGTTTATTCCTCAAGTGGATACCAGAGACTGTGGTCCAGCAGCCCTAGCTTCAGTAGCCAAGCAC
TATGGTTCGGACTATTCTCTGGCTAGATTGCGAGAGCTTTCAAAGACTGATAAGCAGGGAACGACAGCTCTTGGTTTAGT
AGAAGCTGCCAAGGCTATTGGTTTTGAAACCCGCTCGATCAAGGCTGATATGACTTTGTTTGACTATACGGATTTAACAT
ACCCTTTTATTGTCCATGTGGTTAAGAACAAGCGTCTCCAGCACTATTATGTCGTCTATGGCAATGACAAGAATAATCTG
ATTATTGGCGACCCTGATCCTAATGTCAAGGTTACTCGCATGTCCAAACAGGACTTCCAAGAAGAGTGGACAGGTCTAGC
CATCTTTCTAGCGCCAACCCCCAACTATAAGCCCAAGAAGGATGAAAAAAATGGCCTCATGAGCTTCTTCCCTATTATTT
TAAGGCAGAAGGCCCTCTTGACTTACATTGTTTTAGCCAGTCTGATGGTAACCCTGATTGATATTGTTGGTTCTTACTAT
CTCCAGGGCATGCTGGATGAATACATTCCAGACCAGTTAATTTCAACTCTGGGTATTATTACCATCGGCTTGATTATTAC
CTATATCATTCAGCAGATGATGAGCTTTGCCAAGGAATACTTGCTTAATGTCCTTAGCCTGCGGTTGGTGATTGATGTTA
TTCTATCTTATATCAAGCACATCTTTACCCTGCCTATGTCTTTCTTTGCGACTCGGCGGACAGGGGAAATTACCTCTCGT
TTTTCTGATGCCAATCAGATCATTAATGCTGTCGCGTCAACCATCTTCTCCATCTTCCTGGATGTAACCATGTTAATTCT
GGTTGGTGGGGTGCTTTTGGTGCAAAATAATCACCTCTTCCTCCTGACCCTGATCTCTATCCCAATTTATGCCATTATCA
TCACCGCCTTCCTCAAACCTTTTGAAAAGATGAATCATGAGGTTATGGAAGCTAATGCCATGGTATCTTCTTCTATCATT
GAGGACATTAATGGGATGGAAACCATCAAATCTTTAACCAGTGAATCCAGTCGTTACCAAAATATCGACGGTGAATTCGT
TGATTATTTGGAGAAAAATTTCAAACTTCAAAAGATGAATGCCCTGCAGACCTCACTCAAGACTGGGGCGAAACTCATTC
TCAATGTAGTCATCCTCTGGTATGGGGCACGCTTAGTTATGGATGGTAAGATTTCTGTTGGGCAATTGATTACCTTTAAT
GCTCTCTTGTCTTACTTCCAAAATCCAATTGAAAATATCATCAGCTTGCAAACTAAACTGCAATCAGCGCGTGTAGCCAA
CACCCGTCTTAATGAAGTCTATTTGGTAGAATCCGAGTTTGAAAACGATGGCGAACTCTCAGAAGATAGCTTCCTAGATG
GGGATATCTCCTTTGAGAAACTGTCCTACAAGTATGGTTATGGTCGCGATACCCTTTCAGACATCAACCTGACCATTGCC
AAAGGCTCTAAGGTCAGCTTGGTAGGACCATCAGGCTCTGGTAAGACAACCTTAGCTAAGATGATGGTCAATTTCTATGA
TCCTAACCGAGGGATTGCCCGTATCAACGGCTATGATCTCAAGGTCATTGATAAGACTGCCCTGCGGCAACATATTAGTT
ATTTACCCCAACAAGCCTATGTCTTTTCTGGCACCATCATGGATAACCTAACCCTAGGGGCTAAGGAAGGCACTACCCAG
GAAGACATTATCCGAGCTTGTGAAATTGCAGAAATCCGCTCGGATATTGAGCAGATGCCTCTTGGTTACCAAACAGAACT
CTCTGACGGTGCTGGGGTTTCAGGCGGTCAGAAGCAAAGGATTGCGTTGGCCCGTGCCCTCCTAACTCAGGCCCCTGTCT
TAATTTTGGATGAGGCCACCAGCAGTTTAGATGTCCTGACGGAAAAGAAAATTGTTGATAACCTCATGGCCATGACCGAC
AAGACCGTTATCTTTGTCGCTCACCGATTGAGTATCGCGCAAAGGACAGATCGGATTATCGTCATGGACCAAGGAAAGAT
TGTGGAAGAAGGTAGCCATAAGGAACTCTTGGCTAATAAGGGCTTCTACTACACACTGTTTAACTAA

Domains

Predicted by InterProScan.

Peptidase C39 family (Peptidase_C39)

(57-194)

ABC transporter (ABC_tran)

(552-701)

ABC transporter transmembrane region (ABC_membrane)

(220-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

83.203

100

0.832
  comA Streptococcus mitis NCTC 12261

67.643

93.359

0.632
  comA Streptococcus mitis SK321

66.946

93.359

0.625
  comA Streptococcus pneumoniae Rx1

66.806

93.359

0.624
  comA Streptococcus pneumoniae D39

66.806

93.359

0.624
  comA Streptococcus pneumoniae R6

66.806

93.359

0.624
  comA Streptococcus pneumoniae TIGR4

66.527

93.359

0.621
  comA Streptococcus gordonii str. Challis substr. CH1

65.406

92.969

0.608