Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABZP20_RS00955 Genome accession   NZ_CP160433
Coordinates   210643..212175 (-) Length   510 a.a.
NCBI ID   WP_009239215.1    Uniprot ID   A0AAD2BLU6
Organism   Ralstonia sp. CP     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 205643..217175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP20_RS00925 (ABZP20_00925) - 205770..207086 (+) 1317 WP_004633824.1 sigma-54 dependent transcriptional regulator -
  ABZP20_RS00930 (ABZP20_00930) - 207144..207881 (-) 738 WP_009239219.1 DUF2278 family protein -
  ABZP20_RS00935 (ABZP20_00935) - 208021..208581 (-) 561 WP_009239218.1 TlpA disulfide reductase family protein -
  ABZP20_RS00940 (ABZP20_00940) - 208684..209196 (-) 513 WP_009239217.1 O-acetyl-ADP-ribose deacetylase -
  ABZP20_RS00945 (ABZP20_00945) - 209281..209850 (+) 570 WP_009239216.1 hypothetical protein -
  ABZP20_RS00950 (ABZP20_00950) - 209941..210582 (+) 642 WP_004633832.1 LysE family transporter -
  ABZP20_RS00955 (ABZP20_00955) comM 210643..212175 (-) 1533 WP_009239215.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABZP20_RS00960 (ABZP20_00960) - 212390..212902 (-) 513 WP_004637063.1 hypothetical protein -
  ABZP20_RS00965 (ABZP20_00965) - 213080..213337 (-) 258 WP_004637064.1 accessory factor UbiK family protein -
  ABZP20_RS00970 (ABZP20_00970) - 213870..214685 (+) 816 WP_009239214.1 TorF family putative porin -
  ABZP20_RS00975 (ABZP20_00975) - 214732..215070 (+) 339 WP_004637070.1 P-II family nitrogen regulator -
  ABZP20_RS00980 (ABZP20_00980) - 215101..216648 (+) 1548 WP_004637072.1 ammonium transporter -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54903.65 Da        Isoelectric Point: 7.3836

>NTDB_id=1021081 ABZP20_RS00955 WP_009239215.1 210643..212175(-) (comM) [Ralstonia sp. CP]
MSLAVLRSRALSGIDAPAVSVEVHLANGLPSFTIVGLPDTEVKESKDRVRAAIQNSRFEFPARRITVNLAPADLPKESGR
FDLAIALGILAASRQIPHTHLDAHEFAGELSLSGDLRPIRGALAMAYALSRNPVSADGDAPLARDFVLPAENAAEAALVS
GTKVLPARTLIEVCDHLSAPDRKLAPALPALVDADIRYPDLADVRGQPQARRALEVAAAGGHSMLMIGPPGTGKSMLAQR
FPGLLPDMSDDEALSAAAVMSLTTRGFDARRWKVRPFRSPHHTASAVAMVGGGNTPRPGEISLAHQGVLFLDELPEFERR
VLEVLREPLETGHITISRAARQTDFPASFQLIAAMNPCPCGYRGHPLRACRCTPDQVERYQARISGPLLDRIDVQIEVPT
PSQEELLDGPPGEPTRNVAERVSAAHARQLARQGKRNALLGGHEIDLHCSRTDAADGLLRHAMTRFSWSARAYARVLKLA
RTIADLAGDEQIDAAHVGEAIQYRRGVKAD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=1021081 ABZP20_RS00955 WP_009239215.1 210643..212175(-) (comM) [Ralstonia sp. CP]
ATGAGCCTCGCTGTACTGCGTTCGCGCGCCCTCTCGGGCATCGATGCGCCGGCCGTCTCGGTGGAGGTCCATCTGGCGAA
TGGCCTGCCATCGTTCACCATCGTCGGCCTGCCTGATACCGAGGTGAAGGAGAGCAAGGATCGCGTACGGGCAGCGATCC
AGAACAGCCGCTTCGAGTTTCCGGCGCGGCGCATCACCGTCAACCTCGCCCCGGCCGATCTTCCAAAAGAATCGGGCCGG
TTCGACCTCGCTATCGCGCTGGGCATCCTCGCCGCGAGCCGGCAGATTCCGCACACGCACCTGGACGCGCACGAGTTTGC
GGGCGAGCTGTCGCTGTCCGGCGATCTGCGGCCGATTCGCGGTGCGCTGGCGATGGCGTATGCGCTGTCGCGCAACCCCG
TCTCCGCCGATGGCGACGCACCACTTGCCCGCGACTTCGTGCTGCCCGCCGAGAACGCCGCCGAAGCTGCGCTAGTAAGC
GGCACCAAAGTCCTGCCCGCGCGCACGCTCATCGAGGTGTGCGACCACTTGAGCGCGCCGGATCGCAAGCTCGCGCCCGC
GCTGCCCGCGCTGGTCGACGCGGACATCCGCTATCCCGACTTGGCGGACGTGCGGGGGCAGCCGCAAGCGCGGCGCGCGC
TGGAAGTGGCCGCCGCCGGCGGTCATTCCATGTTGATGATCGGGCCGCCCGGCACCGGCAAGTCGATGCTCGCGCAACGG
TTTCCCGGCTTGCTGCCGGACATGAGCGATGACGAAGCGCTTTCCGCCGCCGCGGTGATGAGCCTGACCACGCGCGGCTT
CGACGCACGGCGTTGGAAGGTGCGGCCGTTCCGTTCGCCACACCACACAGCATCTGCGGTGGCGATGGTGGGCGGGGGCA
ACACGCCCAGGCCGGGCGAAATCTCGCTGGCGCATCAGGGCGTGCTCTTCCTCGACGAGCTTCCCGAGTTCGAGCGCCGT
GTGCTCGAAGTCCTGCGTGAGCCATTGGAAACCGGCCACATCACCATCTCACGCGCAGCGCGTCAGACAGACTTCCCTGC
CAGCTTCCAGCTGATTGCCGCAATGAACCCGTGTCCGTGCGGCTATCGCGGGCATCCGCTGCGGGCGTGCCGCTGCACAC
CGGATCAGGTGGAGCGATACCAGGCGCGCATTTCGGGGCCACTGCTTGATCGCATCGATGTGCAGATAGAGGTCCCGACG
CCCTCGCAGGAGGAGTTGCTCGACGGGCCGCCTGGTGAACCGACGCGCAACGTGGCCGAGCGTGTCTCTGCCGCGCACGC
GCGACAGCTCGCACGACAAGGCAAACGCAACGCCTTGCTGGGCGGCCATGAAATCGATCTGCATTGCAGCCGCACCGATG
CGGCGGATGGCTTGCTGCGCCACGCGATGACGCGCTTCTCGTGGTCCGCCCGCGCCTATGCACGCGTGCTCAAGCTCGCC
CGCACGATTGCCGATCTGGCAGGCGACGAGCAGATCGACGCGGCGCATGTGGGCGAGGCCATTCAGTATCGGCGCGGGGT
GAAGGCGGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-405)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.767

99.216

0.524
  comM Vibrio campbellii strain DS40M4

52.673

99.02

0.522
  comM Glaesserella parasuis strain SC1401

51.176

100

0.512
  comM Legionella pneumophila strain ERS1305867

50.784

100

0.508
  comM Legionella pneumophila str. Paris

50.784

100

0.508
  comM Haemophilus influenzae Rd KW20

49.515

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.248

100

0.427

Multiple sequence alignment