Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB0A83_RS03940 Genome accession   NZ_CP160405
Coordinates   828759..830267 (+) Length   502 a.a.
NCBI ID   WP_367155458.1    Uniprot ID   -
Organism   Methylomonas sp. HYX-M1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 823759..835267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0A83_RS03920 (AB0A83_03920) - 825947..826894 (-) 948 WP_367155457.1 DUF58 domain-containing protein -
  AB0A83_RS03925 (AB0A83_03925) - 826891..827817 (-) 927 WP_150046913.1 AAA family ATPase -
  AB0A83_RS03930 (AB0A83_03930) - 827921..828496 (+) 576 WP_232056771.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB0A83_RS03935 (AB0A83_03935) - 828501..828752 (+) 252 WP_150046917.1 accessory factor UbiK family protein -
  AB0A83_RS03940 (AB0A83_03940) comM 828759..830267 (+) 1509 WP_367155458.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB0A83_RS03945 (AB0A83_03945) pilQ 830333..832633 (-) 2301 WP_150046921.1 type IV pilus secretin family protein -
  AB0A83_RS03950 (AB0A83_03950) - 832647..833195 (-) 549 WP_150046923.1 pilus assembly protein PilP -
  AB0A83_RS03955 (AB0A83_03955) - 833199..833546 (-) 348 WP_367155459.1 type 4a pilus biogenesis protein PilO -
  AB0A83_RS03960 (AB0A83_03960) - 833443..833811 (-) 369 WP_367155460.1 type 4a pilus biogenesis protein PilO -
  AB0A83_RS03965 (AB0A83_03965) - 833808..834380 (-) 573 WP_150046926.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54178.24 Da        Isoelectric Point: 7.7860

>NTDB_id=1020996 AB0A83_RS03940 WP_367155458.1 828759..830267(+) (comM) [Methylomonas sp. HYX-M1]
MSLAVVYSRGRTGIAAPLVTVEVHVGNGLPALNIVGLPEAAVKESKDRVRGAIINSQFEFPFQRITINLAPADLPKEGGR
FDLAIALGILAASGQIPKDGLARYEFVGELSLGGQLRPITGALPVAIQSRDAHRQLILPVENAAEATLISDIELLPAETL
LQVCAHLAGTHALDSYRTPLTSVEQEFALDFADVHGQYHVKRAMEIAAAGRHNLLMLGPPGTGKSMLAARLPTILPALTE
RQALETAAIASISDSGLDVSKWRQPPFRAPHHTASAAALVGGGSNPKPGEISLAHNGALFLDELPEFDRRVLEVLREPLE
TGHITISRANRQAEFPARFQLIAAMNPCPCGYLGDASGRCHCTSEQVARYRARVSGPLMDRIDMHLEVPRVPLAVLRVGD
STVEEASGEIRRRVIAARKLAELRQGKCNSELGAKEIKALCRLSDTGHQLLEQAMEKFGLSHRAYHRILKVARTVADLAD
SSAIETSHLSEAIGYRKLDRSR

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=1020996 AB0A83_RS03940 WP_367155458.1 828759..830267(+) (comM) [Methylomonas sp. HYX-M1]
ATGTCGCTGGCGGTTGTCTACAGCCGTGGCCGAACCGGAATCGCCGCGCCGTTAGTGACGGTTGAAGTCCACGTCGGTAA
CGGCCTGCCGGCGTTGAACATCGTCGGCTTGCCCGAAGCGGCGGTTAAAGAAAGCAAAGACAGGGTGCGCGGCGCCATTA
TCAATTCCCAGTTCGAGTTTCCGTTTCAAAGAATCACAATCAATTTGGCTCCCGCCGACTTGCCGAAAGAAGGCGGGAGA
TTCGATTTGGCGATTGCGTTGGGCATTTTGGCGGCATCCGGGCAAATCCCCAAAGACGGCCTAGCTCGCTACGAGTTCGT
CGGCGAGTTGTCGCTGGGCGGTCAGCTGCGTCCGATCACCGGGGCATTGCCGGTTGCCATACAAAGCCGGGATGCGCATA
GGCAACTGATCCTGCCAGTAGAAAACGCGGCGGAAGCTACTTTGATCTCGGATATCGAGCTATTGCCGGCCGAAACCTTG
TTGCAAGTCTGCGCGCATTTAGCCGGTACCCACGCGCTGGATAGTTATCGGACGCCGTTAACTTCGGTCGAGCAGGAGTT
TGCGCTCGACTTTGCCGACGTGCACGGTCAATATCACGTGAAAAGAGCGATGGAAATCGCCGCCGCCGGGCGTCACAATT
TGTTGATGCTGGGACCGCCGGGTACCGGGAAGTCGATGTTGGCGGCGCGTTTACCGACCATATTGCCGGCGTTAACCGAA
AGACAGGCTCTGGAGACCGCGGCAATCGCCTCGATCAGCGACAGCGGTTTGGACGTATCGAAATGGCGTCAGCCGCCGTT
TAGAGCGCCGCATCACACGGCATCGGCGGCGGCCTTGGTTGGCGGCGGCAGCAATCCCAAGCCGGGCGAAATCTCATTGG
CGCACAATGGGGCCTTGTTTTTAGACGAATTGCCGGAGTTCGACCGTAGGGTTCTGGAGGTACTGCGCGAGCCTTTGGAG
ACCGGGCATATCACGATTTCCCGGGCGAATCGGCAAGCGGAGTTTCCGGCGCGCTTTCAATTGATTGCCGCGATGAATCC
TTGTCCGTGCGGTTATCTGGGCGATGCGTCCGGCCGCTGCCATTGTACCTCGGAGCAGGTGGCGCGTTACCGGGCTAGGG
TATCCGGGCCTTTGATGGATAGGATAGACATGCATTTGGAAGTGCCGCGGGTACCGTTAGCGGTGTTGCGGGTCGGCGAT
TCCACGGTGGAAGAGGCCAGTGGCGAAATTCGCCGCAGGGTAATCGCGGCCCGCAAGTTAGCCGAATTGCGTCAAGGTAA
ATGTAATAGCGAACTGGGTGCCAAGGAAATCAAAGCGTTGTGCCGTTTATCGGATACCGGACACCAGTTGTTGGAACAGG
CGATGGAAAAATTCGGCTTGTCGCACAGAGCCTATCACCGCATTTTGAAAGTGGCCAGGACGGTGGCCGATTTGGCCGAT
TCGAGTGCAATAGAAACGTCGCATTTGAGCGAAGCAATCGGCTACCGCAAACTGGATCGCAGTCGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.4

99.602

0.542
  comM Glaesserella parasuis strain SC1401

53.28

100

0.534
  comM Haemophilus influenzae Rd KW20

52.673

100

0.53
  comM Vibrio cholerae strain A1552

52.6

99.602

0.524
  comM Legionella pneumophila str. Paris

51.107

99.004

0.506
  comM Legionella pneumophila strain ERS1305867

51.107

99.004

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.047

100

0.476

Multiple sequence alignment