Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABZ559_RS03095 Genome accession   NZ_CP160400
Coordinates   608888..609397 (+) Length   169 a.a.
NCBI ID   WP_367007203.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 603888..614397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS03075 (ABZ559_03075) - 604432..605478 (+) 1047 WP_273414766.1 alcohol dehydrogenase catalytic domain-containing protein -
  ABZ559_RS03080 (ABZ559_03080) mutY 605532..606674 (-) 1143 WP_367007201.1 A/G-specific adenine glycosylase -
  ABZ559_RS03085 (ABZ559_03085) - 606947..607432 (-) 486 WP_367007202.1 LemA family protein -
  ABZ559_RS03090 (ABZ559_03090) rpsF 608586..608876 (+) 291 WP_018376394.1 30S ribosomal protein S6 -
  ABZ559_RS03095 (ABZ559_03095) ssbA 608888..609397 (+) 510 WP_367007203.1 single-stranded DNA-binding protein Machinery gene
  ABZ559_RS03100 (ABZ559_03100) rpsR 609435..609674 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  ABZ559_RS03105 (ABZ559_03105) comE/blpR 610037..610777 (+) 741 WP_367007204.1 LytTR family DNA-binding domain-containing protein Regulator
  ABZ559_RS03110 (ABZ559_03110) - 610774..612081 (+) 1308 WP_367007205.1 GHKL domain-containing protein -
  ABZ559_RS03115 (ABZ559_03115) - 612389..612454 (+) 66 Protein_600 YSIRK-type signal peptide-containing protein -
  ABZ559_RS03120 (ABZ559_03120) - 612478..612591 (+) 114 WP_367007616.1 SH3 domain-containing protein -
  ABZ559_RS03125 (ABZ559_03125) - 612607..613281 (+) 675 WP_367007206.1 DUF6287 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18687.34 Da        Isoelectric Point: 4.8894

>NTDB_id=1020922 ABZ559_RS03095 WP_367007203.1 608888..609397(+) (ssbA) [Streptococcus sp. ZY19097]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQAGEREADFINCVIWRQQAENLANWAKKGTLVGITGRIQTR
NYDNQQGQRVYVTEVIADSFQVLESRATREGNAGGSYNSNGYNNNSFGGASSTNGYSQPSQSQTPNFARDESPFGNSNPM
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1020922 ABZ559_RS03095 WP_367007203.1 608888..609397(+) (ssbA) [Streptococcus sp. ZY19097]
ATGATTAATAATGTAGTACTTGTGGGTCGTATGACTCGCGATGCAGAACTCCGTTATACACCGTCTAATCAAGCAGTTGC
AACTTTCACGCTTGCCGTGAATCGCAATTTCAAGAATCAAGCTGGTGAACGTGAAGCTGATTTTATCAACTGTGTCATCT
GGCGTCAGCAGGCTGAAAATTTGGCAAACTGGGCTAAAAAGGGAACATTAGTTGGTATTACAGGACGTATTCAAACACGT
AATTATGATAATCAGCAAGGTCAACGTGTTTACGTGACTGAAGTGATTGCAGATAGTTTCCAAGTTTTGGAAAGTCGTGC
TACACGCGAAGGTAATGCAGGTGGCTCTTATAATTCAAATGGTTATAACAATAATTCATTTGGTGGGGCATCTAGTACGA
ATGGTTATTCACAACCTTCACAATCACAAACCCCTAACTTTGCGAGAGATGAAAGCCCATTTGGAAATTCTAACCCGATG
GATATCTCAGATGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.101

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

58.14

100

0.592
  ssb Glaesserella parasuis strain SC1401

32.804

100

0.367

Multiple sequence alignment