Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABZN20_RS16075 Genome accession   NZ_CP160399
Coordinates   3293975..3294430 (+) Length   151 a.a.
NCBI ID   WP_367027577.1    Uniprot ID   -
Organism   Methylococcus sp. ANG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3288975..3299430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZN20_RS16065 (ABZN20_16065) - 3291436..3292383 (+) 948 WP_367025912.1 bestrophin family ion channel -
  ABZN20_RS16070 (ABZN20_16070) - 3292477..3293871 (+) 1395 WP_367025913.1 MFS transporter -
  ABZN20_RS16075 (ABZN20_16075) ssb 3293975..3294430 (+) 456 WP_367027577.1 single-stranded DNA-binding protein Machinery gene
  ABZN20_RS16080 (ABZN20_16080) - 3294461..3295672 (-) 1212 WP_367025914.1 glycosyltransferase family 2 protein -
  ABZN20_RS16085 (ABZN20_16085) zwf 3296133..3297614 (+) 1482 WP_367025915.1 glucose-6-phosphate dehydrogenase -
  ABZN20_RS16090 (ABZN20_16090) - 3297937..3298902 (-) 966 WP_367025916.1 hypothetical protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 15896.28 Da        Isoelectric Point: 4.7688

>NTDB_id=1020897 ABZN20_RS16075 WP_367027577.1 3293975..3294430(+) (ssb) [Methylococcus sp. ANG]
MPNGGAVANLRIATSESWKDQQTGQLQERTEWHSVVMYRRLAEIAGEYLKKGSKVYIEGSLRTRKWQDKNTGQDRYTTEI
IGNEMQMLDRAGGGMGGGGTGAGEPDWDAPPAGGGSRPRSSGGGYGGGTGTGGSGAGSSQFDEGFDDDVPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=1020897 ABZN20_RS16075 WP_367027577.1 3293975..3294430(+) (ssb) [Methylococcus sp. ANG]
ATGCCGAACGGCGGCGCGGTCGCCAATCTGCGCATCGCCACCAGCGAATCCTGGAAGGACCAGCAAACCGGCCAGCTCCA
GGAACGCACCGAATGGCACAGCGTGGTGATGTACCGCCGCTTGGCGGAAATCGCCGGCGAGTATCTGAAGAAAGGCAGCA
AGGTCTACATCGAAGGGAGCCTTCGGACCCGGAAGTGGCAGGACAAGAACACCGGTCAGGACCGCTACACCACCGAAATC
ATCGGCAATGAAATGCAGATGCTCGACCGTGCCGGCGGGGGCATGGGTGGCGGCGGAACGGGGGCGGGCGAACCGGACTG
GGATGCCCCTCCGGCGGGCGGCGGCTCCAGGCCGCGCAGTTCGGGGGGCGGATATGGCGGCGGCACCGGCACCGGCGGGA
GCGGCGCTGGAAGCAGCCAATTCGACGAGGGGTTCGACGACGACGTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.534

100

0.556
  ssb Vibrio cholerae strain A1552

46.012

100

0.497
  ssb Neisseria meningitidis MC58

41.401

100

0.43
  ssb Neisseria gonorrhoeae MS11

40.764

100

0.424

Multiple sequence alignment