Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABZN20_RS00250 Genome accession   NZ_CP160399
Coordinates   51521..53041 (-) Length   506 a.a.
NCBI ID   WP_367026409.1    Uniprot ID   -
Organism   Methylococcus sp. ANG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 46521..58041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZN20_RS00215 (ABZN20_00215) - 46714..46827 (+) 114 WP_367027593.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ABZN20_RS00220 (ABZN20_00220) - 46835..47182 (+) 348 WP_218806155.1 HigA family addiction module antitoxin -
  ABZN20_RS00225 (ABZN20_00225) - 47185..47418 (+) 234 WP_367026406.1 type II toxin-antitoxin system MqsA family antitoxin -
  ABZN20_RS00230 (ABZN20_00230) - 47703..48773 (+) 1071 WP_367026407.1 IS630 family transposase -
  ABZN20_RS00245 (ABZN20_00245) rep 49521..51524 (-) 2004 WP_367026408.1 DNA helicase Rep -
  ABZN20_RS00250 (ABZN20_00250) comM 51521..53041 (-) 1521 WP_367026409.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABZN20_RS00255 (ABZN20_00255) - 53050..53301 (-) 252 WP_218806162.1 accessory factor UbiK family protein -
  ABZN20_RS00260 (ABZN20_00260) glnK 53562..53900 (+) 339 WP_010961376.1 P-II family nitrogen regulator -
  ABZN20_RS00265 (ABZN20_00265) - 53932..55374 (+) 1443 WP_305080242.1 ammonium transporter -
  ABZN20_RS00270 (ABZN20_00270) - 55489..55941 (-) 453 WP_367026410.1 DUF1810 domain-containing protein -
  ABZN20_RS00275 (ABZN20_00275) trxC 55987..56406 (-) 420 WP_367026411.1 thioredoxin TrxC -
  ABZN20_RS00280 (ABZN20_00280) - 56410..56628 (-) 219 WP_218806165.1 DUF2892 domain-containing protein -
  ABZN20_RS00285 (ABZN20_00285) grxC 56779..57042 (+) 264 WP_218806166.1 glutaredoxin 3 -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54133.17 Da        Isoelectric Point: 7.7237

>NTDB_id=1020879 ABZN20_RS00250 WP_367026409.1 51521..53041(-) (comM) [Methylococcus sp. ANG]
MALAIVHSRARQGIEAPEVTVEVHISPGLPNLTIVGLPETAVRESKDRVRGALITTGFEFPAQRITVNLAPADLPKEGGR
FDLPIALGILAASKQLRADRLADLECVGELALTGELRPVPGALPVALQSRRAERNLIVPWDNAGEAALVSGACVLPARHL
LDVCAHLDGSRPLAAVESRTVAVPASEEPPDLAEVRGQFQAKRALEIAAAGRHNLLMLGPPGTGKSMLASRMPGILPDLT
EDEALETAAVASVSGMPFDPAAWRRPPYRAPHHTASAPALVGGGSAPKPGEISLAHNGVLFLDELPEFDRRVLEVLREPL
ESGGITISRAAQRLDFPARFQLIAAMNPCPCGYLGDASGRCHCSAEQVARYRARISGPLLDRIDMHVDVPRQDPATLLDG
APRNEETSAQVRTRVIAARERALQRSGQPNALLTPRLIERHCMPDSAGRALLEQAMARLNLSHRAYHRILKLARTIADLA
GSDAITSAHIGEAIGYRRLDRAPAAR

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1020879 ABZN20_RS00250 WP_367026409.1 51521..53041(-) (comM) [Methylococcus sp. ANG]
ATGGCGCTCGCCATCGTCCATAGCCGGGCCCGCCAGGGCATCGAGGCGCCGGAAGTCACCGTGGAAGTCCATATTTCCCC
GGGGCTCCCCAACCTCACCATCGTCGGCCTGCCGGAAACCGCCGTGCGCGAGAGCAAGGACCGGGTGCGCGGCGCGCTCA
TCACCACCGGTTTCGAATTTCCCGCCCAGCGCATCACCGTCAACCTGGCTCCGGCCGATCTGCCCAAGGAAGGCGGCCGT
TTCGACCTGCCGATCGCCCTCGGCATCCTGGCCGCTTCGAAGCAGCTCCGCGCCGATCGGCTGGCGGACCTGGAATGCGT
CGGCGAGCTGGCGCTCACCGGCGAACTGCGCCCGGTGCCCGGCGCCCTGCCGGTCGCCCTCCAGTCGCGCCGCGCCGAGC
GGAACCTGATCGTACCCTGGGACAACGCCGGCGAAGCGGCCCTGGTCTCCGGCGCCTGCGTGCTCCCGGCCCGCCATCTG
CTGGACGTGTGCGCCCATCTGGACGGCAGCCGCCCCCTCGCCGCCGTCGAATCGCGCACCGTAGCGGTTCCGGCCAGCGA
GGAGCCGCCCGATCTCGCCGAAGTCCGCGGCCAGTTCCAGGCCAAGCGCGCCCTGGAAATCGCCGCCGCCGGCCGCCACA
ACCTGCTGATGCTGGGCCCGCCCGGCACCGGCAAATCCATGCTGGCCTCGCGCATGCCCGGCATCCTGCCCGACCTGACC
GAGGACGAGGCGCTGGAAACCGCGGCGGTCGCCTCGGTCAGCGGCATGCCCTTCGACCCGGCGGCCTGGCGCCGCCCGCC
GTACCGCGCGCCCCATCACACCGCCTCCGCCCCGGCGCTGGTCGGCGGAGGAAGCGCGCCCAAGCCCGGCGAGATTTCGC
TGGCCCACAACGGCGTGCTGTTCCTGGACGAGCTGCCGGAATTCGACCGGCGCGTCCTGGAAGTCCTGCGCGAGCCCTTG
GAAAGCGGCGGCATCACCATTTCCCGCGCCGCCCAGCGGCTGGATTTTCCTGCCCGCTTCCAGCTCATCGCGGCGATGAA
CCCCTGCCCCTGCGGCTACCTGGGCGACGCCTCCGGGCGCTGCCATTGCTCGGCCGAGCAGGTTGCGCGCTACCGCGCGC
GCATCTCCGGACCACTCCTGGACCGGATCGACATGCACGTCGACGTACCCCGCCAAGACCCGGCCACGCTCCTGGACGGC
GCACCGCGGAACGAAGAAACCAGCGCCCAGGTCCGGACCCGCGTGATCGCCGCCCGCGAGCGGGCGCTCCAACGCAGCGG
CCAGCCCAACGCCCTGCTCACGCCGCGCCTGATCGAGCGCCACTGCATGCCCGACAGCGCGGGACGCGCTTTGTTGGAAC
AGGCCATGGCGCGGCTGAACCTGTCGCACCGCGCCTATCACCGCATCCTCAAGCTCGCCCGCACCATCGCCGATCTCGCC
GGGAGCGATGCGATCACCTCCGCCCACATCGGCGAAGCCATCGGCTACCGGCGTCTCGACCGGGCTCCCGCCGCCCGATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.086

99.012

0.565
  comM Vibrio campbellii strain DS40M4

56.436

99.802

0.563
  comM Haemophilus influenzae Rd KW20

55.357

99.605

0.551
  comM Glaesserella parasuis strain SC1401

54.274

99.407

0.54
  comM Legionella pneumophila str. Paris

49.398

98.419

0.486
  comM Legionella pneumophila strain ERS1305867

49.398

98.419

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.457

100

0.466

Multiple sequence alignment