Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABV589_RS10480 Genome accession   NZ_CP160398
Coordinates   2337050..2338396 (+) Length   448 a.a.
NCBI ID   WP_367085762.1    Uniprot ID   -
Organism   Pseudomonas sp. HOU2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2332050..2343396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV589_RS10455 (ABV589_10455) pgeF 2332259..2332981 (-) 723 WP_367085759.1 peptidoglycan editing factor PgeF -
  ABV589_RS10460 (ABV589_10460) rluD 2332978..2333940 (-) 963 WP_007963852.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABV589_RS10465 (ABV589_10465) - 2334091..2335113 (+) 1023 WP_007963851.1 outer membrane protein assembly factor BamD -
  ABV589_RS10470 (ABV589_10470) - 2335241..2335474 (+) 234 WP_367085760.1 PP0621 family protein -
  ABV589_RS10475 (ABV589_10475) pilS 2335464..2337053 (+) 1590 WP_367085761.1 ATP-binding protein Regulator
  ABV589_RS10480 (ABV589_10480) pilR 2337050..2338396 (+) 1347 WP_367085762.1 sigma-54 dependent transcriptional regulator Regulator
  ABV589_RS10485 (ABV589_10485) thiO 2338486..2339586 (-) 1101 WP_367085763.1 glycine oxidase ThiO -
  ABV589_RS10490 (ABV589_10490) - 2339644..2340045 (-) 402 WP_007963842.1 type IV pilin protein -
  ABV589_RS10495 (ABV589_10495) - 2340061..2343141 (-) 3081 WP_367085764.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49962.26 Da        Isoelectric Point: 6.5112

>NTDB_id=1020859 ABV589_RS10480 WP_367085762.1 2337050..2338396(+) (pilR) [Pseudomonas sp. HOU2]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQTLLQRNAFDLCLTDMRLPDGTGLDLVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSTALRMPAAGGSVTSIDRRLLGDSPPMRALRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAQQPFIPVNCGAIPSELMESEFFGHRKGSFTGAVDDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVAAGRFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHMLQRLASNSGQPAAQLHPQALEALKRYRFPGNVRELENVLERAHTLCENQVIEAEDLRLSEGSCAVEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=1020859 ABV589_RS10480 WP_367085762.1 2337050..2338396(+) (pilR) [Pseudomonas sp. HOU2]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCGCGCAATCTCGGCGAAGCCCAGACGTTGTTGCAGCGCAATGCGTTTGATCTGT
GCCTGACCGACATGCGCCTGCCTGACGGCACGGGGCTGGACCTGGTGCAGCACATCCAGCAGCGTTATCCACAACTGCCG
GTGGCGATGATTACCGCGTATGGCAGCCTGGAAACCGCGATCAACGCCTTGAAGGCCGGAGCCTTCGACTTCCTCACCAA
ACCGGTTGATCTCACGCGCCTGCGTGAACTGGTCAGCACCGCGTTGCGCATGCCTGCCGCCGGCGGCAGCGTCACCTCGA
TCGACCGCCGACTGCTGGGCGACTCGCCCCCAATGCGCGCTCTGCGCAAACAAATCGACAAGCTCGCCCGCAGTCAGGCT
CCGGTCTACATCAGCGGCGAATCGGGCAGCGGCAAAGAGCTGGTCGCGCGGCTGATCCACGAACAAGGGCCGCGCGCGCA
ACAGCCGTTTATACCGGTCAACTGCGGGGCGATCCCTTCAGAGCTGATGGAGAGCGAGTTTTTTGGCCATCGCAAAGGCA
GCTTCACCGGCGCGGTGGACGACAAACCGGGGCTGTTTCAGGCCGCGCACGGCGGCACCCTGTTTCTCGATGAAGTGGCG
GATCTGCCGCTGTCGATGCAGGTCAAGCTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATTCTGTGCGCCACGCACAAAGACCTGGAAGCGGAAGTCGCCGCCGGGCGCTTTCGTCAGG
ATCTGTATTATCGGTTGAACGTGATCGAACTGCGGGTGCCGTCCCTGCGCGAACGGCGCGACGACATCGAAGTGCTGGCT
GCGCACATGCTCCAGCGTCTGGCCAGCAACAGTGGCCAGCCGGCAGCCCAACTGCACCCGCAAGCGCTTGAAGCACTGAA
GCGTTATCGTTTTCCCGGAAATGTGCGAGAACTGGAGAATGTCCTCGAACGCGCGCATACGCTATGCGAAAACCAGGTGA
TCGAGGCCGAGGATTTGCGCTTGAGCGAAGGAAGTTGCGCAGTCGAGGGCGGCATTGCCGACCTGACGCAGATCGATAAC
CTTGAGGATTACCTGGAAAACGTCGAACGCAAACTGATTCTGCAGGCGCTGGAGGAAACGCGCTGGAATCGTACGGCGGC
GGCGCAGCGTTTGAGTCTGTCGTTCAGGTCGATGCGCTATCGGCTGAAAAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.007

98.884

0.781
  pilR Acinetobacter baumannii strain A118

49.02

100

0.502
  luxO Vibrio cholerae strain A1552

38.063

99.107

0.377

Multiple sequence alignment