Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABV589_RS10475 Genome accession   NZ_CP160398
Coordinates   2335464..2337053 (+) Length   529 a.a.
NCBI ID   WP_367085761.1    Uniprot ID   -
Organism   Pseudomonas sp. HOU2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2330464..2342053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV589_RS10455 (ABV589_10455) pgeF 2332259..2332981 (-) 723 WP_367085759.1 peptidoglycan editing factor PgeF -
  ABV589_RS10460 (ABV589_10460) rluD 2332978..2333940 (-) 963 WP_007963852.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABV589_RS10465 (ABV589_10465) - 2334091..2335113 (+) 1023 WP_007963851.1 outer membrane protein assembly factor BamD -
  ABV589_RS10470 (ABV589_10470) - 2335241..2335474 (+) 234 WP_367085760.1 PP0621 family protein -
  ABV589_RS10475 (ABV589_10475) pilS 2335464..2337053 (+) 1590 WP_367085761.1 ATP-binding protein Regulator
  ABV589_RS10480 (ABV589_10480) pilR 2337050..2338396 (+) 1347 WP_367085762.1 sigma-54 dependent transcriptional regulator Regulator
  ABV589_RS10485 (ABV589_10485) thiO 2338486..2339586 (-) 1101 WP_367085763.1 glycine oxidase ThiO -
  ABV589_RS10490 (ABV589_10490) - 2339644..2340045 (-) 402 WP_007963842.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58368.08 Da        Isoelectric Point: 6.7386

>NTDB_id=1020858 ABV589_RS10475 WP_367085761.1 2335464..2337053(+) (pilS) [Pseudomonas sp. HOU2]
MIAEAAHADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDDLLRSGSWLYLVLNILLVVFLENTRRPAQLF
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAIANTLLRRRIGLLIAAIGALGIVASSFLLGLSQPLSANNYLQAGTLG
ALCFAASLLVQGLVRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAKSLLAQSHLEGHLID
DYSPTLVERLQLWLSNPTLRPQSLKIPGNGLELQPNFIALAQSPNQQTLVFLEDLAQVAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLGESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEHFVAESREQANER
QSIHLRINSGDFITLMDPDQLTQILDNLLRNGWRHSALLHEQAEVWLALFIDPDSQLAVLEVQDNGPGVPPDQQSHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1020858 ABV589_RS10475 WP_367085761.1 2335464..2337053(+) (pilS) [Pseudomonas sp. HOU2]
GTGATCGCTGAGGCCGCCCACGCCGACAGTAAACAGGCGCAGCGCCTGCTGCGTCTCTATCATCTCTACCGTTTGAGCGT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCGCCTGCTGACCTCGGCCGACGACGACCTGTTGCGCA
GCGGCAGTTGGTTGTATCTGGTGCTGAATATTCTGCTGGTGGTGTTCCTCGAGAACACTCGCCGCCCGGCGCAGCTGTTC
AGCCTGGCGCTGGTCGATGTGCTGCTGCTGTGCGGCCTGTTCTACGCGGCGGGCGGCGTCGCCAGCGCCATCGGCAACCT
GCTGATTGTCTCGGTGGCGATCGCCAATACCCTGCTGCGCCGCCGCATCGGCCTGCTGATTGCCGCCATCGGCGCTCTCG
GCATTGTCGCTTCCAGTTTCCTGCTGGGGCTCAGCCAGCCCCTGAGTGCCAACAATTACCTGCAAGCCGGGACCCTCGGT
GCCCTGTGTTTTGCCGCTTCACTGCTGGTACAGGGTCTGGTGCGGCGCCTGGAAGTCAGCGAGACCCTCGCCGAACAGCG
CGCCAGCGAGGTGGTCGGCCTCGAGGCCCTCAACGCCCTGATTCTGCAGCGCATGCGCACCGGCATTCTGGTGCTCGACG
AACAACGCCGGGTGCAGTTGGCCAATCACAGCGCGAAAAGCCTGCTGGCGCAGTCGCACCTTGAGGGGCATTTGATCGAT
GACTACTCGCCGACACTGGTCGAGCGCCTGCAACTGTGGCTGAGCAACCCGACCCTGCGCCCGCAGAGTCTGAAAATCCC
CGGCAACGGTCTGGAACTGCAACCGAACTTCATCGCCCTCGCACAGAGCCCGAACCAGCAGACCCTGGTATTTCTCGAAG
ACCTTGCACAAGTTGCCCAGCAAGCCCAGCAACTCAAGCTCGCCGCGCTCGGGCGCCTGACCGCCGGCATCGCCCATGAA
ATCCGCAATCCATTGGGGGCCATAAGTCACGCCGCGCAGCTATTGGGCGAGTCCGAGGAACTCGATGGCGCCGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAATGTCCTGCAACTGTCGCGTCGCCAGC
AGAGCGCTCCGCAACGCCTGGATCTCAAGCCTTGGCTGGAACACTTTGTTGCCGAGAGCCGCGAACAGGCGAACGAGCGC
CAGTCGATTCATTTGCGGATCAATTCCGGGGACTTCATCACGCTGATGGACCCCGACCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAATGGCTGGCGACACAGCGCCCTGCTGCATGAGCAGGCCGAGGTCTGGCTGGCGTTGTTCATCGATCCTG
ACAGCCAGCTGGCGGTGCTCGAAGTGCAGGACAACGGCCCCGGTGTGCCGCCCGATCAGCAGTCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603

Multiple sequence alignment