Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABU603_RS06815 Genome accession   NZ_CP160387
Coordinates   1509243..1510421 (+) Length   392 a.a.
NCBI ID   WP_367441846.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer09     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1504243..1515421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU603_RS06795 (ABU603_04390) - 1505335..1506543 (+) 1209 WP_370470415.1 PilT/PilU family type 4a pilus ATPase -
  ABU603_RS06800 (ABU603_04385) murU 1506649..1507353 (+) 705 WP_367441853.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ABU603_RS06805 (ABU603_04380) ruvC 1507473..1508024 (+) 552 WP_100140820.1 crossover junction endodeoxyribonuclease RuvC -
  ABU603_RS06810 (ABU603_15480) - 1508134..1508919 (-) 786 WP_370469874.1 DUF2071 domain-containing protein -
  ABU603_RS06815 (ABU603_04365) dprA 1509243..1510421 (+) 1179 WP_367441846.1 DNA-processing protein DprA Machinery gene
  ABU603_RS06820 (ABU603_04360) - 1510433..1510891 (+) 459 WP_367421149.1 DUF494 family protein -
  ABU603_RS06825 (ABU603_04355) topA 1511031..1513325 (+) 2295 WP_370469875.1 type I DNA topoisomerase -
  ABU603_RS06830 (ABU603_04350) rsmD 1513404..1513976 (+) 573 WP_367421153.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABU603_RS06835 (ABU603_04345) - 1514065..1514319 (+) 255 WP_267409014.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 42474.79 Da        Isoelectric Point: 6.5012

>NTDB_id=1020740 ABU603_RS06815 WP_367441846.1 1509243..1510421(+) (dprA) [Snodgrassella alvi strain Acer09]
MNELERYAWIELALTPYIGSETFLRILKHFGSAQIALAADVAEIKPFLIRSRAGQYWRSEEARKAAEAALQWEQKHENAR
LLLLAENDYPPLLSEGLTPPPLLFIRGNIHYLQQPSLAIVGSRHATPQAMRIARDFAKALAQKEIAVISGMADGIDTAAH
QGALLGKGTTVAVWGTGIDRVYPARNKSLAAEIAEHGCIISEFPLGTRSLAGNFPRRNRLIAALSHGTLVIEAATESGSL
ITARLAGEMGREVMAIPGSINNPLSKGCHALIKQGAKLVENLDDILHECPFLLQKTQVHSYSHQSSQFIQSDTPVLLVEE
TEDLLLDKTAASALTSPEKQILDGLGYGIVHPDTLVSTLGIPATDVYANLMALELGGWITALPGGCYQRIKS

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1020740 ABU603_RS06815 WP_367441846.1 1509243..1510421(+) (dprA) [Snodgrassella alvi strain Acer09]
ATGAATGAGCTCGAGCGCTATGCTTGGATTGAGCTGGCATTAACCCCCTATATTGGCAGTGAAACATTTTTACGTATCTT
AAAACATTTTGGTTCGGCACAAATCGCTTTGGCCGCAGATGTGGCGGAAATTAAACCTTTCCTGATTCGTTCTCGGGCCG
GTCAATACTGGCGCAGTGAGGAAGCAAGAAAAGCAGCTGAAGCCGCCCTGCAATGGGAGCAAAAGCATGAAAATGCACGC
TTATTATTGCTGGCTGAAAATGATTATCCACCATTGCTTTCTGAAGGTTTGACACCGCCTCCATTATTATTTATACGGGG
TAACATCCATTATCTGCAACAGCCCTCATTGGCTATTGTTGGCAGCCGACATGCTACGCCACAAGCAATGCGTATTGCCC
GTGATTTTGCCAAGGCATTAGCACAAAAAGAAATTGCTGTGATATCAGGCATGGCTGATGGTATAGATACCGCAGCCCAT
CAAGGTGCTTTACTTGGCAAAGGTACTACTGTTGCCGTCTGGGGTACAGGAATAGATCGCGTGTATCCGGCACGCAACAA
ATCATTGGCCGCTGAAATTGCCGAACATGGCTGTATAATTTCAGAATTTCCACTAGGCACACGTTCTTTGGCAGGTAATT
TCCCTCGTCGCAATCGCCTGATTGCAGCCCTCAGCCATGGTACCCTAGTGATAGAGGCTGCAACCGAATCTGGCTCCCTG
ATTACTGCGCGATTGGCCGGTGAAATGGGGCGTGAGGTTATGGCAATACCTGGTTCAATTAATAACCCATTAAGCAAAGG
TTGTCATGCATTGATAAAACAGGGTGCCAAACTGGTTGAAAATCTAGATGATATACTTCATGAGTGCCCTTTCCTCTTGC
AAAAAACGCAAGTGCATTCATATAGCCATCAATCTTCACAATTTATTCAATCAGATACACCTGTACTGCTTGTTGAAGAG
ACTGAAGATCTCTTATTAGACAAAACAGCTGCATCAGCACTCACATCGCCGGAGAAACAAATTCTGGATGGATTAGGTTA
TGGTATCGTACATCCAGATACACTGGTCTCAACACTTGGCATCCCTGCTACAGATGTGTATGCTAATCTTATGGCACTGG
AACTAGGTGGCTGGATTACCGCACTGCCGGGCGGTTGTTATCAACGCATTAAATCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-280)

DprA winged helix domain (DprA_WH)

(329-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

57.561

100

0.602
  dprA Neisseria meningitidis MC58

57.561

100

0.602
  dprA Neisseria gonorrhoeae strain FA1090

58.458

100

0.599
  dprA Neisseria gonorrhoeae MS11

57.96

100

0.594
  dprA Vibrio cholerae strain A1552

38.363

99.745

0.383
  dprA Vibrio campbellii strain DS40M4

37.629

98.98

0.372

Multiple sequence alignment